Microsatellites /Tandem Repeats database

Genome: Enterococcus faecium NRRL B-2354

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
108146TTTTTTTCTTTTTTGGTTTTTCTTTDesign primers
119177GGAAATGAAAATGAAAATGGAAAADesign primers
170584TT-TT-AT-TT-TC-CT-TT-AT-TT-TA-TT-TT-TDesign primers
316041GAAAA-AGCAA-AAGAA-AAGCA-AAAADesign primers
424311TT-AT-TT-TG-AT-TT-TT-TT-TT-AT-AT-TTDesign primers
487317ATTTAAAATTAAAATTAAATTAAADesign primers
527143AAGCGAAT-CAGCGAAT-CAGCGAATDesign primers
565909AACATTGACAGCATTGACAGCATTGACDesign primers
577376CAGCAA-CAGAAA-CAGAAA-CAGAAADesign primers
664932ACAAAAAGAACAAAAAAAACAAGAAGADesign primers
743940TGA-TGA-CGA-TGA-TGA-TGA-AGA-TGADesign primers
798663CAAAAAAACGCAAAGAAGCGGAAAAAATCGDesign primers
862059AAAAGC-AAAAGC-AAAATC-AAAAACDesign primers
972788TAAAATAAAGAAAAACAAAATAAAADesign primers
1029716AGATAAAGATCAAGATACCGATAADesign primers
1051170CGGCGGCTTCTCTGG-TGGCGGCTTCTCTGG-TGGCGGCTTCGGTGGDesign primers
1117635CACAAGCACTAGCACAATCACAACDesign primers
1147040AAAAGAAAATAATAAAGAGAATAATAAAGAAAACAADesign primers
1172429AAAGTAAATCCGAAAGTAAATAGGGAAGTAAATCCTDesign primers
1172500AAACA-ATACA-AAACA-AAACA-AGACADesign primers
1175317TTTGGCGGTTTTTTGGCGGAATGATGGCGGTTTDesign primers
1247941GTTTTGTTCTGTATTGTTTGCTTTTDesign primers
1262466AAAGAAAAAAACAGAAAAAAGAAGADesign primers
1528181AG-AC-AA-AA-AG-TC-AA-AA-AG-AT-AA-AADesign primers
1808318TTCTGGAGTCACATCTGGTTTTTCTTCTGGGTCTACATCTGGTTTTTCTTCTGGGTCTACATCTGGTTTTTCDesign primers
1839810TTATTGTTATTATTTTTGTTATTGTTATTCDesign primers
1882207TATTATTTGGTTATTAGTTGGCTATTAGTTGATDesign primers
1916881TCTTTATCTATATCTATATCTTTCDesign primers
1952755TTTCTGTTTTTGTTTCTGTATCTGDesign primers
1983326TCGATTTGATTCCTTTTGATTCGATTTTGTDesign primers
2154975CTTTTTCGTTTTTTTCGTCTTTTTCCTDesign primers
2309782TC-TT-TT-GC-TT-TT-TG-TT-TT-TC-TA-TTDesign primers
2458013GCC-GCC-ACC-GCC-ACC-GCC-GCC-GCCDesign primers

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