Microsatellites /Tandem Repeats database

Genome: Escherichia coli APEC O78

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
58940AATGCCAATGGCGATGCCAATTCCDesign primers
118752CGCGGTAAATCTCGATAAATGGCGGTAATTDesign primers
362399ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
680199AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers
682489AAAATCTATTCAAGTATCTATTCACGAATCTATTCADesign primers
775347GCAGCAACAGCAGCAGCGCCAGCADesign primers
866221TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
974656GTCAGATTCTGACCCGTCAAAATCTGACGCATCAAAATCTGACCCDesign primers
1286812GACGCATCAAATTTTGACGGGTCAGATTTTGATGCGTCAGATTTTDesign primers
1488954AGTTAATTATAATATAATTATAAGTTAATTAAADesign primers
1495233AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
1689025GATGAA-GATGAA-TATGAA-GATGACDesign primers
1690710GCAGCAGCAGTATCAGCAGCCGCADesign primers
1844621ATTGGGATTGTGATTGGCATTGCGDesign primers
2403253TTCTTGATCTGTATCTTTATCTGTATCTTTATCTGTDesign primers
2854165GCACACCACAGAACACCACATCACADesign primers
2865294TTTCC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAACDesign primers
3078640TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
3208899ACGGAACAGATCGGAACGAATCGGADesign primers
3674952GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3734411CA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AT-AA-AADesign primers
3905719CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
4239449GTCGTG-GTCGTG-ATCGTG-GTGGTG-ATCGTGDesign primers
4258406TT-TT-TG-TT-TT-AT-TT-TT-TT-GT-TT-TT-AT-TT-TTDesign primers
4460845CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
4542202CCCTCACCCTAACCCTCTCCCTCADesign primers
4751351GCGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.