Microsatellites /Tandem Repeats database

Genome: Rhizobium tropici CIAT 899

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
107738GACGAAGATGAAGACGATGACGACDesign primers
111529AATTCTA-CTGCCTA-CTGCCTA-CTGCCTA-CTGCCTA-CTGCCTA-CTGCCTA-CTGCCTA-CTGCCTADesign primers
122497GC-CG-AG-AT-CG-CG-GC-CG-AA-AT-CG-CG-GG-CG-AG-AG-CG-CGDesign primers
516166CCGGCGCCTGATTACCCTGGGCCTGATTACCCCCCGCCTGATTGCDesign primers
572518GGCAGTAGGCAGTGGGCAGCAGGCAGTGDesign primers
596885TTGAGGCTGAGGTTCAGGCTGAGGDesign primers
747103TTCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
811393GTCCATGCCGCCCATGCCGCCCATGCCDesign primers
970352CAGGCAG-TAGGCAG-TAGGCAG-TAGGCAGDesign primers
970429ATCTATT-GCCTATT-GCCTATT-GCCTATT-GCCTATT-GCCTATTDesign primers
1013543CGCCGATGCCGACGCAGACGCCGADesign primers
1074501CGGCCACGGGCACAGCCATGGCCACGCCCADesign primers
1102071GTTCCAGCAATATCTCA-GCCCCAGGAATATCTCA-GCCCCAGGAATATCTCA-GCCCCAGGAATATCTCADesign primers
1451485TTCTTGATAATTTCTTGACTATTTTTTGTTAATDesign primers
1496868CCGGCGCCTGCGCCGACGCCGGCTDesign primers
1529393GGAAAAGAAAAAGGAAGAGGACAADesign primers
1654961GAACGTGACG-TAGCGTGACG-TAGCGTGACG-TAGCGTGACGDesign primers
1963328CCCCGAAACATTGCGCCCATGAAACATTGCGCCCATGAAACATTGTGCDesign primers
2124360TCATGATCGTGATCATGGCCATGADesign primers
2332608CACCGCTTCCATCGCTTCCGCCGCTTCDesign primers
2463875GTGCCGATTTTGCCGGCGCCGGTTTTACCGGCGACGGTTTTGCCGDesign primers
2485137TCGTCC-TCGTCC-TCCTCC-TCTTCCDesign primers
2721965CCGCGGCCGCGCCCGCCGCCTCGGDesign primers
3340525TGGCCGTGATGGTGCGCATGATGGTGATGATGGTGCCCATGATCGCCGTGATGGTGATCATGGDesign primers
3449027CTGCGT-CTGCGT-CTGCTT-CTGCTTDesign primers
3493995TGCCTGTGTCTGCGCCTGGGCCTGDesign primers
3629574CAAGATCAAGACCGAGATCCAGATDesign primers
3637622CCGATCAGCACGATCAGCCCGATCTGCDesign primers
3771150GGCGGCGACGGCGGCCGCGGCGGTDesign primers

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