Microsatellites /Tandem Repeats database

Genome: Halovivax ruber XH-70

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10223CCAGTCCCTCCGATCCACGTCGACCACTCCTTTCGATTCACGTCGATCACTCCTTCCGATCCATGTCGADesign primers
69471CGA-CAT-CGA-CGA-CGT-CGA-CGA-CGT-CGADesign primers
78996CG-TT-CT-CT-CA-CT-CT-CT-CT-CT-CT-CT-CA-CT-CT-CT-CT-CA-CT-CT-CT-CT-CT-CT-CA-CT-CT-CT-CA-CT-CT-CT-CA-CT-CT-CTDesign primers
79069TC-TC-TC-AC-TC-TC-TC-AC-TC-TC-TC-GCDesign primers
116384CCGACGCCGAAGCCGTCGGCGACGDesign primers
138833TCGAGATCGAGCGCGAGATCGAGGDesign primers
145628CGGCGTCGGCGCCGACGTCGGCGADesign primers
190323CCCAGGCCCAGCGCCAGGCCCAGGDesign primers
314042TCTTCGTCGTCTTCGTCATCTGCGTCGDesign primers
315808GCCGACGATGACGAGGACGCAGACGATGAAGACGACGACGCGGATGACGAGGACDesign primers
315892GACGATGAGGACGACGCAGATGAGGAAGACGACGATGCGGACGATDesign primers
329955CCGTTACGACACGTCGAATTCGTCTCGTTACGACACGTCACATCCGTCCCGTTACGACTCGTCGCACTCGCCDesign primers
430705GACCGACGTGACCCACGTCACCGACGTDesign primers
452989GA-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CTDesign primers
469285TCCGTCGTGATCCGCCGTCACCCGTCGGGADesign primers
488086GC-GT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CTDesign primers
502321CCGACGCAGACGCCGAGGCCGAGGDesign primers
521614AG-TC-CG-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TCDesign primers
550790GC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TCDesign primers
609037TCTCGCCGTCGCTTTCGGCGTCGCTCTCGTCGTCTCDesign primers
618541CCGACGGGGGACGACCCGGCGCCGACGATGGATAACCCGGCGCCGACGAGGGACGAACCGGTGDesign primers
636570GCCGCCACCGCCGTCGCCGCCGACDesign primers
669268TCGGCGTCGGCCTCGACGTCGTCGDesign primers
675923CGACGAGGACGACGACGGCGACGADesign primers
696547CGGTTCGGGTCGGTGCGGTCTGGTTDesign primers
702765CA-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TCDesign primers
749342CCAGCATCGTCTCGCGGTGACCGTCAGAATCGTCTCGTAGTGACCGCCAGAATCGTCTCGTGGTGACCGDesign primers
785252CGAATCCCCGGGGACGGA-CGACCACCCGGGGACGGA-CGACCACCCGGGGACGGA-CGACCACCCGGGGACGGADesign primers
788546ACGCCGGCGCCGACGGCGACGCCGDesign primers
838122GGCCGGACCGGGCCCTGCCGGGCCGDesign primers
862459TCGTCGTCGGCGTCGTCCTCGTCGDesign primers
878704TTCGATCTG-TTCGATCTG-TTCGATCGGDesign primers
885915CCGTCGCCATCGGCGTCGACGTCGDesign primers
894023CGCCGACGCCGGCGCCCACGTCGADesign primers
911745GGCGTCGTCGTCGACGTCGGCGGCDesign primers
918367TCGCCATCGTCGCCGTCGTCGCCTTCGDesign primers
923326TACTCGTTCCGATACTCGGCCCGACAATCGTTCCGADesign primers
944563GTCGTCGTGGTCGTCGCCTTCGTCDesign primers
956073GGTGACGAG-GGTGACGAG-GGTGACGGGDesign primers
964731TCGTTCTCTCTCTCTCTCTCTCGTACTCACDesign primers
1125436CGT-CTT-CGT-CGT-CCT-CTT-CGT-CGTDesign primers
1152417CGTCGATGGCGTCGATCGCGACGATGGDesign primers
1154029TT-GG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TGDesign primers
1172856GGCTCTTGCTCTGGCTCGGGTTCTDesign primers
1207546GT-CG-GT-GT-GT-GT-GT-GT-GT-GT-GT-GT-GT-GT-GTDesign primers
1227259GAGCCCGAGCCAGAGTCCGAGGCCDesign primers
1227694GG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TGDesign primers
1238180CT-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TCDesign primers
1264135TCGAACTCGACCTCGATCTCGATCDesign primers
1274319TCGACGGCGACGTCGCCGTCTACGDesign primers
1290756TGTCGG-TGTCGG-TGACGG-CGTCGGDesign primers
1295181CG-TT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CTDesign primers
1305247CTCGACGTCGACTTCGACCGCGACDesign primers
1327893AT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CTDesign primers
1350940TCGTCGCCGTCGTCTTCGTCGTCTDesign primers
1361801GG-TA-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TGDesign primers
1363147CGTCGTCGACGTCGTGGTCGGCGTDesign primers
1396928GTGGAGACCGTCGACTGAGGAGTTGAGACTGCCGACTGGGGAGTGGAGACCGTTCACTGAGGAGTTGAGACCGTCCACTGAGGADesign primers
1424262CGCCGCCGTCGCCGCCGGTGCCGCDesign primers
1444958TCGTCGTCCTCGTCATCGTCGTCCDesign primers
1463370GCCGCCCATGCCACCCATGCCGCCCATDesign primers
1537383TCCTATTCTCCGTCGTTGGCAGTCCGCTTCTCCGTCGTTGACGGTCCTGTTCGCTATCGTTGGCAGDesign primers
1650319TCGATCAGCCCGATCTGCTACTCGGATCAGTCCGATCTGCTACTCGGATCAGTCCGAGCTGCTACTDesign primers
1665618TGTTCGTCCCGTTCGTCCTGTTCGTCCDesign primers
1686864GT-CA-CA-CA-CA-CA-CA-CA-CA-CA-CA-CA-CA-CA-CADesign primers
1720742TCGACGTCGCCGACGACGTCGAGGDesign primers
1840539CG-AG-CG-CG-AA-CG-CG-AG-CG-CG-AG-CGDesign primers
1858855GTC-GTC-TTC-GTC-CTC-GTC-CTC-GTCDesign primers
1868279ACC-GCC-ACC-ACC-ACC-ACC-ACC-ACC-ACC-ACCDesign primers
1868383CACCACCACTACCACCATCACCGCDesign primers
1893956GA-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
1920749CGTCGTCTTCGTCCTCGTCGTCGGDesign primers
1933065GTCCGGTCCGACGTCCAGTCCGATGTCCGGACCGTCDesign primers
2076032TC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
2103914GAGAA-AAGAA-GAGAA-GAGGA-GAGAADesign primers
2132066CGGCGTCCGCGTCGACGTCGGCGGCGGCCTDesign primers
2170951TCGTCGGCCTCGTCAGCCTCGTCGGCGDesign primers
2203476CGCCGGACT-CGTCGGACT-CGTCGGACT-CGTCGGACTDesign primers
2243249CGCCAGCGCCTGCGCCAGCGCGAGDesign primers
2327376CAGCCGAACCCGCCGAACCCGCCGAACDesign primers
2344045CA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GADesign primers
2375936GGATGTCGGGGATGACGGGGATGTCGCDesign primers
2424747CA-TC-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GADesign primers
2429384GT-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers
2457533ACTCGATCTCGAAGTCGAACTCGTDesign primers
2458917TCCGTTCCGGCTGATTCGTCCGTTCCGACAGACTCGCCCATTCCGGCTGAATCGDesign primers
2625837AGATGC-AGACGC-AGACGC-AGACGCDesign primers
2638405CGGCGTCGACGTCGTCGTCGGCCTDesign primers
2693878CGACGTCGGCGTCGAGGTCGACGADesign primers
2698240CGACGCCGACTCCTACGCCGAGGCDesign primers
2717563CGTCCTCGACGTACTCGACGTCCACGADesign primers
2727046AA-CA-CA-CA-CA-CA-CA-CA-CA-CA-CA-CADesign primers
2738216CA-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
2756824GA-GT-AA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GADesign primers
2780522CGTCGACCTCGACGTAGACGTCGTDesign primers
2795752AT-AG-AT-AT-CG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers
2798545TC-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GADesign primers
2890897GG-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
2923348GACGCCGACGACGACCCCGACGGCDesign primers
2950484AGCCATCATCACCACCTCATGCAGCCATTACCACCACTTCACGCAGCCATCATCACCACTTCACGADesign primers
2963253TC-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GADesign primers
3020020TGGCCGTCGCCGTCGCCGTGGGCGDesign primers
3020233TCGGCCTCGTCGGCTTCGTCGTCCTCGDesign primers
3062478TCGCGG-TCGCCG-TCGCCG-CCGCGGDesign primers
3066683CCTCGTCGGCCGCGTCGGCCGCGTCGGDesign primers
3086217CGTCTCCGTCGCCGTCTGCGACTCDesign primers
3122647CG-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
3168553CCGGTCGACGGGTTATCGTGGATCCGGTCGACGGGTCGTCGTAGATTCGGTCGACGGGTCGTCGTGGGTDesign primers
3171506GCT-CGT-CGT-CTT-CGC-GAT-CGT-CGT-GGT-CGC-GGT-CGT-CCT-CTT-CGTDesign primers
3175385CGACCGTCTCTTCGACGGTCTCACCGACCGTTTCCTCGACCGTCTCACCGACTTTCTGTTCGACGGTTTCACCAACCGTTTCTTCGACCGTCTCGCDesign primers
3175540TCGACAGTCTCGCCGACAGTCTCTTCGACCGTTTCGDesign primers
3175612TCGACTGTCTTCTCGACCGTCTCCTCGACGGTTTTCDesign primers
3198310CG-AT-AG-CA-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers

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