Microsatellites /Tandem Repeats database

Genome: Mycobacterium canettii CIPT 140070017

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
126017TGACATAGGT-TGACATAGGT-TGACATAGGTDesign primers
242799CCGTCGCAAAC-CCGTCGCAAAC-CCGTCGCAAACDesign primers
320232CGGCCTCGAAAC-CGGCCTCGAAAC-CGGCCTCGAAACDesign primers
337421CGCCGCCGG-CGCCGCCGG-CGCCGCCGGDesign primers
338869GACCACGATCAT-GACCACGATCAT-GACCACGATCATDesign primers
426258TCCCGCCGT-TCCCGCCGT-TCCCGCCGTDesign primers
432971TGCCGAGGTTTGCAC-TGCCGAGGTTTGCAC-TGCCGAGGTTTGCACDesign primers
629440CGGCGGCAA-CGGCGGCAA-CGGCGGCAADesign primers
637043CTAGCGAGGGTT-CTAGCGAGGGTT-CTAGCGAGGGTT-CTAGCGAGGGTT-CTAGCGAGGGTTDesign primers
638987CGGGGCCGG-CGGGGCCGG-CGGGGCCGGDesign primers
872155CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
873928NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
875182CGGCGGGGC-CGGCGGGGC-CGGCGGGGCDesign primers
875404CGGGGCCGG-CGGGGCCGG-CGGGGCCGGDesign primers
876121CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
1142535NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
1243961GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
1244022TTGCCGCCG-TTGCCGCCG-TTGCCGCCGDesign primers
1247479CGGTGCCGC-CGGTGCCGC-CGGTGCCGCDesign primers
1247883CCGGCCCCG-CCGGCCCCG-CCGGCCCCGDesign primers
1268816GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
1268956CGGCGGCGC-CGGCGGCGC-CGGCGGCGCDesign primers
1551665CCGCCGGTG-CCGCCGGTG-CCGCCGGTGDesign primers
1551925CCCGCCGGC-CCCGCCGGC-CCCGCCGGCDesign primers
1634265GCCGGGCTG-GCCGGGCTG-GCCGGGCTGDesign primers
1634832GCCGCCGGC-GCCGCCGGC-GCCGCCGGCDesign primers
1679816CGCCGTTGC-CGCCGTTGC-CGCCGTTGCDesign primers
1692418GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
1692603CGCCGTTGC-CGCCGTTGC-CGCCGTTGCDesign primers
1693245CGCCGTCGC-CGCCGTCGC-CGCCGTCGCDesign primers
1695354CGCCGGCCC-CGCCGGCCC-CGCCGGCCCDesign primers
1699716GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
1794323NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
2058416NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
2072590GGCGCCGCC-GGCGCCGCC-GGCGCCGCCDesign primers
2073001CCCGCCGGC-CCCGCCGGC-CCCGCCGGCDesign primers
2073781CGCCCCACC-CGCCCCACC-CGCCCCACCDesign primers
2166302CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
2166773CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
2223429CGGCCCATCGAGACTC-CGGCCCATCGAGACTC-CGGCCCATCGAGACTCDesign primers
2627467CGTGGTCGCCGGCGGCTG-CGTGGTCGCCGGCGGCTG-CGTGGTCGCCGGCGGCTGDesign primers
2799300GGCGGGGCC-GGCGGGGCC-GGCGGGGCCDesign primers
2799624GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
2909898CACCGTTGC-CACCGTTGC-CACCGTTGCDesign primers
3144651CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
3480794NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
3863107CCGCCGGTG-CCGCCGGTG-CCGCCGGTGDesign primers
3863489CGCCGGTGC-CGCCGGTGC-CGCCGGTGCDesign primers
3864671NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4032460CCGGCGGCA-CCGGCGGCA-CCGGCGGCA-CCGGCGGCADesign primers
4032892CCGGCGGGG-CCGGCGGGG-CCGGCGGGG-CCGGCGGGGDesign primers
4032966AACGGCGGC-AACGGCGGC-AACGGCGGC-AACGGCGGCDesign primers
4034019GGCAACGGC-GGCAACGGC-GGCAACGGCDesign primers
4037293NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4038394NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4039699CGGCGGCAC-CGGCGGCAC-CGGCGGCACDesign primers
4044688CGGCGGGAC-CGGCGGGAC-CGGCGGGACDesign primers
4050531NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4052009CCGGCGGCA-CCGGCGGCA-CCGGCGGCADesign primers
4149338GCCGCCCGC-GCCGCCCGC-GCCGCCCGCDesign primers
4202879GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
4203463CGGCAACGG-CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
4206839GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
4207423CGGCAACGG-CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
4210872NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
4212326GGCGGGGCC-GGCGGGGCC-GGCGGGGCCDesign primers
4212799CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
4212889CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
4212994CGGCGGCGC-CGGCGGCGC-CGGCGGCGCDesign primers
4278215ACCCGGCAT-ACCCGGCAT-ACCCGGCATDesign primers
4472921GGCGTGATCGGGGTTCCC-GGCGTGATCGGGGTTCCC-GGCGTGATCGGGGTTCCC-GGCGTGATCGGGGTTCCC-GGCGTGATCGGGGTTCCCDesign primers

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