Microsatellites /Tandem Repeats database

Genome: Methanoregula formicicum SMSP

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
124834TAAATTAGTAGATATTAGTAGATATTAGTADesign primers
367550ACGGCCACTGCCACCGCCACGGCADesign primers
418056CAG-CAG-CAG-CAC-CCG-CAG-CAG-CCG-CAG-CAGDesign primers
540307GACGATGGCGATGACGAGGAGGATDesign primers
748176GCCGGCCCCGGGCGGACCCGTCCGGTCCCGDesign primers
819130TAAAAAGCAGGATCGGATGCT-TGAGAATCAGGATCAGATGCT-TGAGAATCAGGATCAGATGCT-TGAGAAACAGGATCGGATGCT-TGAGAAACAGGATCAGATGCTDesign primers
819236GGGAAACAGGATCAGATGCTT-GAGAAACAGGATCAGATGCTT-GAGAAACAGGATCAGATGCTGDesign primers
1015178GAAGAAGAATCG-GAAGAAGCACCG-GAAGAAGCACCG-GAAGAAGAACCGDesign primers
1188526CTTTTCGTTTCCTTTGTTTTGTTTTDesign primers
1250694TCGAGATCCAGATCAAGATCGAGADesign primers
1326934AATAAAATTGCAATAAAATTGTAATAAAATGACAATAAAATTGTDesign primers
1382195GCAGCAGGTTTTGCCGTTGTTGCAGCGGGTTTCGCGGTCGTTGCAGCCGGCTTTGCCGTGGTCDesign primers
1434660AAAAAAATTCCAAAATAATTTCCAAAAAAATTTCTADesign primers
1435194ATACCCGTGACAGGTCAGATACCTGTCACAGGTCACTTACCCGTCACGGGTCAGDesign primers
1594477AATGGGAAAAATAGGAAAAATGGGAAADesign primers
1760997CCCGGCCGGGACCGGCCCGGTCCGGDesign primers
1803753TGAAAAAATTTTCAAAAATTCCAAAAAATTDesign primers
1939054TTT-TTT-TTT-TTT-TTG-ATT-TTT-TTT-TCT-TTTDesign primers
1964006AATTATTCCGGCATGATTCCGGCATGATTCCGGDesign primers
1970620TTATACTATCAAATATACTCTCAATTATGATATCAADesign primers
1999431CAGCAGCAAAGAAGGCGGCAGCTAAGAAGACGCCGGCAAAGAAGGCCCCAGCAAAGAAGGCGGCAGCTAAGAAGADesign primers
2235258AGGAGCAGGAACAGCAGCACGAGCDesign primers
2399901CCTGAT-CCTCAT-CCTCAT-CCTGATDesign primers
2512947GGACCGGACGGGCCGGACGGAGCGGACDesign primers
2724091GACCCGGGCCCGGACCCCGACCGGDesign primers
2729022GCCGGCCCCGGCGCCGACCCCGGCDesign primers

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