Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli P43/6/78

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
5809	AGAAGAAGGTATAAAAGAAGGTATAAAAGAGGGTAT	Design primers
9070	TAT-TTA-TTT-TTT-ATT-AAT-TAT-TAT-TTT-T	Design primers
21933	AAAAATAAAATTCAAAATAAAATT	Design primers
36347	ATATATATAAATATTAATAAATATTCATAA	Design primers
45915	ATTGGAACAGACAATAAAAGAATTTGGGAAGACAATAAAAGAATTTGAGAATACAATAAAAGA	Design primers
53817	TTG-TTG-TTG-ATG-TTG-CTG-ATG-TTG	Design primers
64193	ATATTAATAATAATATTGATAATA	Design primers
99141	TATTTTTATAATTTTATATTATTA	Design primers
116142	ATTATTGTAAATTTATTGTAAAATATTTGTAAA	Design primers
134875	ATATTAAATTATATAATATAATACT	Design primers
141282	AAATCAAAGTAAGTTAAAGTAAATTAAAGG	Design primers
143556	GATTAAAATATTAAAAGATTAAAG	Design primers
147100	GCTGAAGAAAAAGTTGAAGAAAAGGCAGAAGAGAAAGCCGAAGAAAAA	Design primers
154750	GT-TT-TT-AT-TT-TT-GA-TT-TT-GT-CT-TT	Design primers
155051	TATAATTTCAAATATAATATTAAATATAATTGCAAT	Design primers
209750	ATTAGTTATTATAACTTATTATTATTTTTT	Design primers
224875	TA-TT-TT-TA-TA-TT-TA-TT-TC-TG-TT-TT	Design primers
247818	AAAATTAAAAGTAAAATCAAAAAT	Design primers
250349	TATAATGTAATAAAAAATAATATAG	Design primers
257821	TTAGA-TATTA-TATTA-TATTA-TATTA-TATTA-TATTA-TATTA-TATTA	Design primers
324505	TT-TT-TT-TT-CT-TT-AT-TT-TT-CT-TT-AT-T	Design primers
334212	TTTTTTATTTTTTTCTTTTTTGTTT	Design primers
408307	TTC-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT	Design primers
435856	TTAATTATTAAATTATATAATTAT	Design primers
445369	ATAATAATAATGAAAATAATAATA	Design primers
445395	AATCAAAATAATAACCAAGATAATAATCAGAATAAT	Design primers
487666	AA-TA-AA-AG-AA-AA-CA-AT-AT-AA-AA-AA-A	Design primers
492156	ATTTTTGTTTTTATTTATATTTTC	Design primers
556275	AAAAGAAAAAAAAGAACAAATAGAAAA	Design primers
558699	TTATTTAATTTTATATTATTATATT	Design primers
591062	ATATAATATCATCTAATAAAATATT	Design primers
595083	CTAATAAAAAATACTAAAAAATTATAAAAA	Design primers
601909	AATAAAATAAAAAAATAATAAAAG	Design primers
610953	AAAAAAAATAAAAAAATAAAAAAAT	Design primers
625563	AAAATTAAATAAATTAAAACAATAT	Design primers
638673	GTG-TTA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA	Design primers
639178	TTA-ATA-ATA-ATA-ATA-ATA-ATA-ATA	Design primers
639414	ATA-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
648873	ATAAATTTAAATATACATATAAAA	Design primers
650329	TTAGG-TCTGG-TCTGG-TCTGG-TCTGG-TCTGG	Design primers
651600	TTATT-AGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC	Design primers
656135	GATT-AGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT	Design primers
665196	AATAATATAAAAATATAATATTAT	Design primers
665406	GAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
685632	TTAT-TTAT-TTTT-TTAT-TTCT-TTAT	Design primers
740943	TTATGTTTTTTTCTTTTTTTTGATTTTTTT	Design primers
753461	TTATTAAAATTTTTAAAAATTTATTAAATA	Design primers
776687	TTTTATTTTGTATTATATTATTTTT	Design primers
782949	ATTAAAATAAAAAATAAATTTAAA	Design primers
795014	AAAATAATAATACAAATAATAATA	Design primers
799473	GTATAATAATTTATAATAATGGAAAATAAT	Design primers
807301	AACTCATACTCCATTTTGTTGAC-TGATCATACTCCATTTTGTTGAC-TGATCATACTCCATTTTGCTGAC	Design primers
807371	AGGCACACTCCATTTTGCTGACTAGGCACACTCCATTTTGTTGACTAGGCACACTCCATTTTGTTGACT	Design primers
814092	TTTCTATATCTATTTTTAATTCTA	Design primers
828532	AAAATATAAGCAAATATAAGGAATTATAAG	Design primers
838347	TATAATTATTATTATACTTAAAAT	Design primers
839253	ATA-ATA-TTA-ATA-CTA-ATA-TTA-ATA	Design primers
869737	TAAATAAAAAATAATAAAAAACAAATAA	Design primers
888993	ATAATGACAATGCTAATGATGATG	Design primers
899769	AATTATTATTAATTATAATATATTTTTATT	Design primers
919430	TATATTTTTTATATATTTTATATTATT	Design primers
926133	AATATC-AATATC-AATACC-CATATC	Design primers
960313	TTTTGCTATTTTGCAATTTTGTTA	Design primers
975057	ATAATAATTAGTATAATAATTGCTATAATAATAATT	Design primers
978515	GTTGGAATTGGAGTTGGGATTGGA	Design primers
997460	AAAAAAAGAAACAAAAAATAAAAAC	Design primers
1076905	AAATATAATAATATATTATAAACTATAAAA	Design primers
1096601	TTTATATTTTTATTTATTTTTATT	Design primers
1100643	TTAAAATTAACATTAAATTTTAAA	Design primers
1107785	TT-TT-TT-TT-AT-AT-TT-TT-TT-AT-GT-TT-T	Design primers
1124686	TTTTTATTATTATCTTTAGTTTTA	Design primers
1131823	ATGAC-TACAC-TACAC-TACAC-TACAC-TACAC-TACAC-TACAC-TACAC	Design primers
1132370	TACTACTACTGCTACTAGTACTAC	Design primers
1146977	AAT-TAT-TAT-TAT-TAT-TAT-TAT-TAT	Design primers
1149573	ATTAATATCAATATTAAAATTAGT	Design primers
1161069	CTTCTTCTTTCATTTCATCTCTTTTCATTTCTTCTTTTTTAGTTT	Design primers
1164666	TAAAGTCATTAGTAACAAAATCATTAGTATTAATTTCATTAGTCA	Design primers
1165006	ATTAGTTATAATATCATTTGTAATAATATTATTAGTAATGATTTC	Design primers
1179863	TAATTGAGTGAAAAA-TAATTATATGAAAAA-TAATTATATGAAAAA-TAATTATATGAAAAA-TAATTATATGAAAAA	Design primers
1207066	ATTTAGCAGATAATTTACCAGATGATTTAGATGATA	Design primers
1236256	AAATAATCTTAAATAATCAAGAATAATGTT	Design primers
1294858	TTTTTTCATATTTTCTCCTATTCTTTTATA	Design primers
1310147	TTATTCTATTATATTATATTTTATA	Design primers
1316233	AACTATTCTAAAAGATTCTAAATTATTCTC	Design primers
1316511	AATTATTAATAATTATTACTAATTAGTATT	Design primers
1373888	TTTTTTTATTTTTTCTTTATTTATT	Design primers
1378074	AAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA	Design primers
1386687	TATAAATATTAATATAGATATTAA	Design primers
1387397	ATAAAAAAATAAAATAATAAATAA	Design primers
1404588	CATTTTCTTTTTCAGTTTCATTTG	Design primers
1407926	AAAAACCTCTAAAAAACACTATAAGCCTCT	Design primers
1423082	ATCATTATTAATTATCATTAATTATTATTT	Design primers
1430416	TGTATATTTATATATAGTTAAGTATATTTT	Design primers
1431052	AT-TT-TT-AT-TT-GT-AT-AT-TT-AT-TT-AT	Design primers
1436081	TTTTCTTTTTGTTCTTCTTTTTGT	Design primers
1446690	ATAAAAAAATAAAAATATAAAACAATAAAGAA	Design primers
1476491	TACAAAGAAGAAAAC-AAAATAGAAGAAAAC-AAAATAGAAGAAAAC-AAAATAGAAGAAAAC	Design primers
1486400	TTTTAATTTTTTATTTATTTAATT	Design primers
1487078	AAAAATTTAACAAAATATAAAAAAACTCAA	Design primers
1501284	TTCATTCTATCATTCTTCCATTCT	Design primers
1502075	ATAAAAAAGATATAAATAATATAGAAAAAATAT	Design primers
1517394	CTATTTTTTATTATTATTTAATATTTTTTA	Design primers
1518499	GCCATACCCATAGCTATAGCAATA	Design primers
1546344	TTATTGATATTGGTATTGATATTG	Design primers
1549537	TTTTTTATCTTTCTTATCTTTTTTAGC	Design primers
1553678	AAAATAAAAAAATATATAATTAAAT	Design primers
1555827	GGTTATGGTAGAGGATATGGCAGAGGTTATGGTATG	Design primers
1555975	TAAAATAATAAAAAATAAAATAAATAAAAA	Design primers
1562698	AAAAAAAGAAAGAAACAAAAGAAAA	Design primers
1569256	TAAATGATAATAAGTGATAATAAGCGATAA	Design primers
1603628	AA-TA-AA-AA-TA-AT-AA-TA-TA-AA-TA-TA	Design primers
1605127	AAAT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT	Design primers
1612523	CAACTTTTTTCTCGATTTTTTTCTCAACTTTTTTAG	Design primers
1626039	GAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
1651763	GGATAACAATACAAACAACAACAATACAAACAACAACAATACAAA	Design primers
1657304	TTTATCTTTTTCTTTATTTTCATC	Design primers
1659528	AACATTAATATTAACTTTAAAATT	Design primers
1714139	TA-TT-AT-TT-TT-AA-TT-AT-TT-CT-TT-TT-AT-TT-CT	Design primers
1740930	AATTTTTACTAATTTGTACAGTTTTTTACT	Design primers
1768237	TCTACTATATTATCTAATACATTATCTTCTATATAA	Design primers
1772085	GATGA-TTTAT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT	Design primers
1780089	AACAATATTAAAGAATATAAAAACATATTA	Design primers
1786237	ATTTCTTTTTCTATTTCGCTTTCTATTTTT	Design primers
1807106	TTAATTT-TTTATTT-TTTTTAT-TTT	Design primers
1814991	CTTTTTTAGTATCTATTTTTGTATTTTTTTCAGTAT	Design primers
1832302	ATAATTTAATATTATATTATAAAAT	Design primers
1834339	AAAAAAAACAAAAAAAAATAAAAAC	Design primers
1877687	AATATAATAAAAAATAATTTAAAAT	Design primers
1897001	CAAAACTACAAAATTATAAAACTA	Design primers
1907456	TATTTTATTGTATATTAATTTATTT	Design primers
1924143	GAAACTACTGAAAATACTGAAACTTCTGAAACTATT	Design primers
1963210	ATTTAAATTTTAATTTCAATATAA	Design primers
1983326	AAATATTATTAATATTATAAATATAAT	Design primers
1990981	TATTTTTGATTGATTTTGATTATTTTTGACTATTTATGAT	Design primers
2013722	ATAAAAATGAAAATAATAATAAAT	Design primers
2033254	TCGAAATCATCATCATCGAAGTCATCATCATCAAAGTCATCGTCA	Design primers
2033317	AAATCATCATCATAATCATCATCAAAGTCTTCATCA	Design primers
2033365	TCATCATCTAAATCTTCATCATCGTCATAATCTTCATCATCATCTAAATCATCG	Design primers
2033440	TCA-TCA-TCA-TCA-TAA-TCA-TCT-TCA-TCA-TCA	Design primers
2033485	TCATCATAATCATCATAATCATCATCATCG	Design primers
2045484	TTTTTTTTAGTTTTTTTGTACTCTTTTTTTATT	Design primers
2062970	TA-TT-TT-TA-TG-TT-TT-TA-TA-TT-TT-TT	Design primers
2083677	TA-AA-TA-AC-AA-AA-AA-TA-AA-AA-TA-AA-TA-AA-AA	Design primers
2116752	TTTTATTATTTTTTATAATTTTGTATTCTT	Design primers
2128778	AT-TT-AT-AT-TT-TT-GT-TT-AT-AT-TT-TT	Design primers
2137659	TTATTATTTTTTTAATTATTTTATTTATTGTTTTTA	Design primers
2152693	GTATTTTCTATATTTTCTGTGTTTTCT	Design primers
2190031	AAAAAATAAAAAAAGAAGAAAATAAAAGAA	Design primers
2195160	TTATTTATATTTTTATTAATATTT	Design primers
2195799	TGT-TCT-TGT-TGT-TGT-TCT-TGT-TGT	Design primers
2206367	TAATTTTAGTTTTACTTTTAATTA	Design primers
2210005	ATAAAAAATTAAAAAATATTATAGAAAATG	Design primers
2210784	AAAGAAGCTAAAAAAGCTTTAAAAGAAGAAAAGAAAGCTCTAAAAAAAGAGAAGAAAGCTTTAAAAAAAGATAAAAAAACTTTG	Design primers
2229385	TTTTGCTTTGTTTTTATTTGTTTTG	Design primers
2305458	ATTAA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA-CAAGA	Design primers
2339586	TATATTTTTATATTATTATATTTT	Design primers
2374170	AA-TA-TA-AA-TT-TA-AA-TA-TA-AA-TA-AA	Design primers
2380619	ATCTTCTATATCTTCTAAATCTTCAATATTTTCTAT	Design primers
2408163	AAGAATA-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG	Design primers
2408321	TTTTTCATA-TTTTTCATA-TTTTTTATA	Design primers
2411918	ACAGCACCAGCAACTGCAAAAGCA	Design primers
2434461	TT-TT-TA-TT-TT-TT-AT-TT-TT-AT-CT-TT-T	Design primers
2443982	ATTTAATAAAAA-ATTTAATAAAAA-ATTTCTTAAAAA	Design primers
2448156	TTATTATTAATATTGTTATTATTA	Design primers
2486383	ATT-ATT-ATT-ATT-GTT-ATT-ATT-GTT-ATT-GTT	Design primers
2486897	AAATAAAATTAAAGAAAAAAGAATA	Design primers
2489295	TT-TA-TA-AT-TT-TA-TA-TA-TT-TT-TT-TA-TA-TT-TT	Design primers
2513688	TACTATTTAATATTTGCTATTTTCTATT	Design primers
2517287	AAAAATTATTCTTTAAAAATCATTCTTTAAAAAATATTATTT	Design primers
2517479	TATATAATAA-AATATAATAA-ATTATAATAA	Design primers
2523461	TATTAATTATATTATTATTTGTATTATTAATTATAT	Design primers
2523637	TTATTAGTATTATTATTTTTATTA	Design primers
2524071	TTT-ATT-ATT-ATT-ATT-ATT-ATT-ATT	Design primers
2548644	AATAAAAAATTTAAAATTTAAAATTTTAAAATTAAAAATTTTAAG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

5809

AGAAGAAGGTATAAAAGAAGGTATAAAAGAGGGTAT