Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli P43/6/78

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
257824GATAT-TATAT-TATAT-TATAT-TATAT-TATAT-TATAT-TATATDesign primers
408308TCA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
610954AAAAAAAT-AAAAAAAT-AAAAAAATDesign primers
638676TTA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
639179TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
639417AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
650331AGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTCDesign primers
651605AGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTC-TGGTCDesign primers
656137TTAG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTGDesign primers
665407ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
807351CATACTCCATTTTGCTGACTAGGCACACTCCATTTTGCTGACTAGGCACACTCCATTTTGTTGACTAGGDesign primers
828533AAATATAAGCAAATATAAGGAATTATAAGCDesign primers
1107786TTTTTTTATATTTTTTTATGTTTTTTAATADesign primers
1131825GACTA-CACTA-CACTA-CACTA-CACTA-CACTA-CACTA-CACTADesign primers
1146978ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
1179870GTGAAAAATAATTAT-ATGAAAAATAATTAT-ATGAAAAATAATTAT-ATGAAAAATAATTAT-ATGAAAAATAATTATDesign primers
1378075AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
1476494AAAGAAGAAAACAAA-ATAGAAGAAAACAAA-ATAGAAGAAAACAAA-ATAGAAGAAAACAAADesign primers
1605129ATGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGTDesign primers
1626040ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
1651765ATAACAATACAAACAACAACAATACAAACAACAACAATACAAACADesign primers
1772090TTTAT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGT-TCTGTDesign primers
2305460TAACA-AGACA-AGACA-AGACA-AGACA-AGACA-AGACA-AGACA-AGACA-AGACA-AGACA-AGACADesign primers
2408165GAATACT-GATTGCT-GATTGCT-GATTGCT-GATTGCT-GATTGCT-GATTGCT-GATTGCT-GATTGCTDesign primers
2517480ATATAATAAA-ATATAATAAA-TTATAATAAADesign primers
2524072TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers

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