Microsatellites /Tandem Repeats database

Genome: Cyanobacterium aponinum PCC 10605

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
57293ATTCACTATTCATT-ATTCACTATTCATT-ATTCACTATTCATTDesign primers
81090TATTGCC-TATTGCC-TATTGCC-TATTGCCDesign primers
112301AACTATT-AACTATT-AACTATT-AACTATT-AACTATTDesign primers
135512AATAGTG-AATAGTG-AATAGTG-AATAGTGDesign primers
160864GATGAGGA-GATGAGGA-GATGAGGADesign primers
160963TTAATTC-TTAATTC-TTAATTC-TTAATTCDesign primers
224198CATCTCCCCATCCCCC-CATCTCCCCATCCCCC-CATCTCCCCATCCCCCDesign primers
334281TAGTTAA-TAGTTAA-TAGTTAA-TAGTTAA-TAGTTAADesign primers
334336TCCCCTCA-TCCCCTCA-TCCCCTCADesign primers
408143AAACCTG-AAACCTG-AAACCTG-AAACCTGDesign primers
428721CACTATT-CACTATT-CACTATT-CACTATTDesign primers
459309CCTGAAA-CCTGAAA-CCTGAAA-CCTGAAADesign primers
474409AGAAGCCTGTCCTAC-AGAAGCCTGTCCTAC-AGAAGCCTGTCCTAC-AGAAGCCTGTCCTACDesign primers
498554TTGCCTC-TTGCCTC-TTGCCTC-TTGCCTCDesign primers
568316AATAATT-AATAATT-AATAATT-AATAATTDesign primers
571020AGTAATA-AGTAATA-AGTAATA-AGTAATADesign primers
578507AAACCTG-AAACCTG-AAACCTG-AAACCTGDesign primers
691109ATTCACT-ATTCACT-ATTCACT-ATTCACTDesign primers
693208ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
739402GGTTGGTAT-GGTTGGTAT-GGTTGGTATDesign primers
750568ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCADesign primers
782082ACCTGAC-ACCTGAC-ACCTGAC-ACCTGACDesign primers
857765TTAATTC-TTAATTC-TTAATTC-TTAATTCDesign primers
901184TATCAGG-TATCAGG-TATCAGG-TATCAGGDesign primers
947383GAGGCAA-GAGGCAA-GAGGCAA-GAGGCAADesign primers
950359ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
968377ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
990722TATTCAC-TATTCAC-TATTCAC-TATTCACDesign primers
1044769AATTAAG-AATTAAG-AATTAAG-AATTAAGDesign primers
1092358AATTAAG-AATTAAG-AATTAAG-AATTAAGDesign primers
1124214CTCTTGC-CTCTTGC-CTCTTGC-CTCTTGCDesign primers
1170747ATTCTTA-ATTCTTA-ATTCTTA-ATTCTTADesign primers
1239801ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
1265646AATAGTG-AATAGTG-AATAGTG-AATAGTGDesign primers
1349979GGGTTCG-GGGTTCG-GGGTTCG-GGGTTCGDesign primers
1364494AAAGGGC-AAAGGGC-AAAGGGC-AAAGGGCDesign primers
1382001CTTTTGC-CTTTTGC-CTTTTGC-CTTTTGCDesign primers
1408346TGATGAGG-TGATGAGG-TGATGAGGDesign primers
1508348AACACCCT-AACACCCT-AACACCCTDesign primers
1516382TTATTTA-TTATTTA-TTATTTA-TTATTTADesign primers
1521622ATTTTATG-ATTTTATG-ATTTTATGDesign primers
1547714TCCCCTCA-TCCCCTCA-TCCCCTCADesign primers
1560040AAACCTG-AAACCTG-AAACCTG-AAACCTGDesign primers
1563429TTACTTA-TTACTTA-TTACTTA-TTACTTADesign primers
1572196CCTCATCA-CCTCATCA-CCTCATCADesign primers
1598561GTTTATGAAACAAGATTTCTTATT-GTTTATGAAACAAGATTTCTTATT-GTTTATGAAACAAGATTTCTTATTDesign primers
1613202CCTATTG-CCTATTG-CCTATTG-CCTATTGDesign primers
1733504GTGTTGGG-GTGTTGGG-GTGTTGGGDesign primers
1748690AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
1749103GTGTTGGG-GTGTTGGG-GTGTTGGGDesign primers
1749189ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCADesign primers
1775759AGGTTTCAGGTGTC-AGGTTTCAGGTGTC-AGGTTTCAGGTGTC-AGGTTTCAGGTGTCDesign primers
1803018TTAAGAA-TTAAGAA-TTAAGAA-TTAAGAA-TTAAGAADesign primers
1864222GAATTAA-GAATTAA-GAATTAA-GAATTAADesign primers
1895845ATAGTTG-ATAGTTG-ATAGTTG-ATAGTTGDesign primers
1895875AATTAAG-AATTAAG-AATTAAG-AATTAAGDesign primers
1911191GAGGCAA-GAGGCAA-GAGGCAA-GAGGCAADesign primers
1911225ATAGTGA-ATAGTGA-ATAGTGA-ATAGTGA-ATAGTGADesign primers
1935508AACTATT-AACTATT-AACTATT-AACTATT-AACTATTDesign primers
1945333ATTGCCT-ATTGCCT-ATTGCCT-ATTGCCTDesign primers
1949928AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
1959955TCTTAC-TCTTAC-TCTTAC-TCTTACDesign primers
1977602AACCTGA-AACCTGA-AACCTGA-AACCTGADesign primers
1987285ATTCTTA-ATTCTTA-ATTCTTA-ATTCTTADesign primers
2047547ACCTGAAACCTGCT-ACCTGAAACCTGCT-ACCTGAAACCTGCTDesign primers
2068139GATGAGGG-GATGAGGG-GATGAGGGDesign primers
2079178AGAATTA-AGAATTA-AGAATTA-AGAATTADesign primers
2083615AGAATTA-AGAATTA-AGAATTA-AGAATTADesign primers
2104440AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTT-AATAGTTDesign primers
2106947AGAATTA-AGAATTA-AGAATTA-AGAATTADesign primers
2213871ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCADesign primers
2259603CACCCCAA-CACCCCAA-CACCCCAADesign primers
2282083TAGTGAA-TAGTGAA-TAGTGAA-TAGTGAADesign primers
2321020ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCADesign primers
2346562GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATADesign primers
2392222AGTAATG-AGTAATG-AGTAATG-AGTAATGDesign primers
2399030CCTGAAA-CCTGAAA-CCTGAAA-CCTGAAADesign primers
2466794TGAAACC-TGAAACC-TGAAACC-TGAAACCDesign primers
2532061CCTCATCC-CCTCATCC-CCTCATCCDesign primers
2533464CCTGAAA-CCTGAAA-CCTGAAA-CCTGAAADesign primers
2588269AGGTGATG-AGGTGATG-AGGTGATGDesign primers
2622962GGTATTAG-GGTATTAG-GGTATTAGDesign primers
2622988GATGAGGT-GATGAGGT-GATGAGGT-GATGAGGTDesign primers
2654221TATTCAC-TATTCAC-TATTCAC-TATTCAC-TATTCACDesign primers
2688800AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
2699269TGAATAG-TGAATAG-TGAATAG-TGAATAGDesign primers
2699333ACTCATT-ACTCATT-ACTCATT-ACTCATTDesign primers
2711011ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
2714710AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
2719291CCTCATCA-CCTCATCA-CCTCATCADesign primers
2729950AATAGTT-AATAGTT-AATAGTT-AATAGTTDesign primers
2732777TTATTAA-TTATTAA-TTATTAA-TTATTAADesign primers
2741049AGTAATG-AGTAATG-AGTAATG-AGTAATGDesign primers
2773135CTAAAAC-CTAAAAC-CTAAAAC-CTAAAACDesign primers
2773167AACCTGA-AACCTGA-AACCTGA-AACCTGADesign primers
2785237TTAATTC-TTAATTC-TTAATTC-TTAATTC-TTAATTCDesign primers
2799979AATAATCAA-AATAATCAA-AATAATCAADesign primers
2803471TCACTAT-TCACTAT-TCACTAT-TCACTATDesign primers
2828506ACCTGAC-ACCTGAC-ACCTGAC-ACCTGACDesign primers
2835887GATGAGGT-GATGAGGT-GATGAGGT-GATGAGGT-GATGAGGTDesign primers
2873852AATTAAA-AATTAAA-AATTAAA-AATTAAADesign primers
2893743GCAAGAG-GCAAGAG-GCAAGAG-GCAAGAGDesign primers
2903123TAGTGAA-TAGTGAA-TAGTGAA-TAGTGAADesign primers
2909612AAACCTG-AAACCTG-AAACCTG-AAACCTGDesign primers
2925934AGGTGTC-AGGTGTC-AGGTGTC-AGGTGTCDesign primers
2929817GGGCAAG-GGGCAAG-GGGCAAG-GGGCAAG-GGGCAAG-GGGCAAG-GGGCAAG-GGGCAAGDesign primers
3015424GAAACCT-GAAACCT-GAAACCT-GAAACCTDesign primers
3031805GCTGGTAAAAACCCTTGT-GCTGGTAAAAACCCTTGT-GCTGGTAAAAACCCTTGT-GCTGGTAAAAACCCTTGT-GCTGGTAAAAACCCTTGTDesign primers
3088988AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
3094156AATTAAG-AATTAAG-AATTAAG-AATTAAGDesign primers
3110161TTAATTC-TTAATTC-TTAATTC-TTAATTCDesign primers
3157736AGTGAAT-AGTGAAT-AGTGAAT-AGTGAAT-AGTGAATDesign primers
3199872TTAATTT-TTAATTT-TTAATTT-TTAATTTDesign primers
3229568AGGAGATG-AGGAGATG-AGGAGATGDesign primers
3232152TTAATTC-TTAATTC-TTAATTC-TTAATTCDesign primers
3247145ATTCTTA-ATTCTTA-ATTCTTA-ATTCTTADesign primers
3253698GATGAGGA-GATGAGGA-GATGAGGADesign primers
3253794ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
3283576TTCTTAA-TTCTTAA-TTCTTAA-TTCTTAADesign primers
3284367ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
3293581AATAAGT-AATAAGT-AATAAGT-AATAAGT-AATAAGTDesign primers
3301844TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTTDesign primers
3355825ACCTGCA-ACCTGCA-ACCTGCA-ACCTGCADesign primers
3367318AATTAGT-AATTAGT-AATTAGT-AATTAGTDesign primers
3480162TTAATTC-TTAATTC-TTAATTC-TTAATTC-TTAATTCDesign primers
3487378ATAGGCA-ATAGGCA-ATAGGCA-ATAGGCADesign primers
3508272AAGGGGC-AAGGGGC-AAGGGGC-AAGGGGCDesign primers
3555175GTGAATA-GTGAATA-GTGAATA-GTGAATADesign primers
3562540CTGAAAC-CTGAAAC-CTGAAAC-CTGAAAC-CTGAAACDesign primers
3611531TATTCAC-TATTCAC-TATTCAC-TATTCAC-TATTCAC-TATTCACDesign primers
3646869TAGGCAA-TAGGCAA-TAGGCAA-TAGGCAADesign primers
3671586ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
3707954TAATTTT-TAATTTT-TAATTTT-TAATTTTDesign primers
3767549AGGTATC-AGGTATC-AGGTATC-AGGTATCDesign primers
3794524ACTATTG-ACTATTG-ACTATTG-ACTATTGDesign primers
3794846AACTCCG-AACTCCG-AACTCCG-AACTCCGDesign primers
3826954GCAAGGGGCTTTCTTCTGACTTAG-GCAAGGGGCTTTCTTCTGACTTAG-GCAAGGGGCTTTCTTCTGACTTAG-GCAAGGGGCTTTCTTCTGACTTAG-GCAAGGGGCTTTCTTCTGACTTAGDesign primers
3841986AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
3848331TTGCCTC-TTGCCTC-TTGCCTC-TTGCCTC-TTGCCTCDesign primers
3912071TAGTGAA-TAGTGAA-TAGTGAA-TAGTGAADesign primers
3924027ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTC-ACTATTCDesign primers
3977800AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
4005476TAAACTTTACA-TAAACTTTACA-TAAACTTTACA-TAAACTTTACADesign primers
4021381GTGTTGGG-GTGTTGGG-GTGTTGGGDesign primers
4030168CACCCCAA-CACCCCAA-CACCCCAADesign primers
4034810CTATTCA-CTATTCA-CTATTCA-CTATTCA-CTATTCADesign primers
4063228AATTAAG-AATTAAG-AATTAAG-AATTAAGDesign primers
4095127AAACCTG-AAACCTG-AAACCTG-AAACCTGDesign primers

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