Microsatellites /Tandem Repeats database

Genome: Microcoleus sp. PCC 7113

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
226998GGTAATT-GGTAATT-GGTAATT-GGTAATTDesign primers
228239AGGCAGG-AGGCAGA-AGGCAGA-AGGCAGA-AGGCAGA-AGGCAGADesign primers
289377GGTAATG-GGTAATG-GGTAATG-GGTAATGDesign primers
342046TCACTGAGGTTGGCACCACTGAGGTTGGCA-TCACTGAGGTTGGCACCACTGAGGTTGGCA-CCACTGAGGTTGGCACCACTGAGGTTGGCADesign primers
357209CCCATTA-CCAATTA-CCAATTA-CCAATTA-CCAATTA-CCAATTADesign primers
394331GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
407688TTATTCCTT-TTATTCCTT-TTATTCCTTDesign primers
537740CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGCDesign primers
540084AGCAAAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAAAAGGCAGAAGGCAGAADesign primers
561726GATGGAGAGGGA-GTTGGAGAGGGA-GTTGGAGAGGGA-GTTGGAGAGGGADesign primers
691180AGATAG-AGATAG-AGATAG-AGATAGDesign primers
830284GGGGAGAT-GGGGAGAT-GGGGAGATDesign primers
874301GGGGAGCT-GGGGAGCT-GGGGAGCTDesign primers
874326GGGAGCTG-GGGAGCTG-GGGAGCTGDesign primers
884760GCCTTCT-ACCTTCT-GCCTTCT-GCCTTCT-GCCTTCT-GCCTTCTDesign primers
884874CTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTGCDesign primers
972633CTCAGGTTAGCGCGACTCAAGTTAGCGCGACTCAGGTTAGTGCGADesign primers
1032152CCTTCAACTTCAAAACCTTCAACTTTAAAACCTTCAACTTTAAAADesign primers
1100678CCTGGCGGTTG-ACTGGCGGTTG-ACTGGCGGTTGDesign primers
1118051TTTACCC-ATTACCC-ATTACCC-ATTACCC-ATTACCC-ATTACCCDesign primers
1162953AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
1232614CTGAATCATCTAAATCAC-CTGAATCATCTAAATCAC-CTGAATCATCTGAATCACDesign primers
1232677CTGAATCAT-CTGAATCAT-CTGAATCATDesign primers
1238736AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCCDesign primers
1252371CCCAAC-CCCAAC-CCCAAC-CCCAACDesign primers
1252402CCAACC-CCAACC-CCAACC-CCAACCDesign primers
1252467CCCAAC-CCCAAC-CCCAAC-CCCAACDesign primers
1378148AACCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTCDesign primers
1447372CCCATTA-CCTATTA-CCCATTA-CCCATTA-CCCATTA-CCCATTA-CCCATTA-CCCATTADesign primers
1535973AAGCAGGGGAGCGGGG-GAGCAGGGGAGCGGGG-GAGCAGGGGAGCGGGGDesign primers
1782605AAGGGGGAC-AAGGGGGAC-AAGGGGGACDesign primers
1809245GCTCAGCCCGTTGTGTTTCCTGTTCAGCCCGTTGTGTTTCCTGTTCAGCTCGTTGTGTTTCCTDesign primers
1935000CCGCGTCC-CCGCGTCC-CCGCGTCCDesign primers
1985260AACACCCCACACCCTACACCC-CACACCCCACACCCTACACCC-CACACCCCACACCCCACACCCDesign primers
1992547AATTGCG-AATTGCG-AATTGCG-AATTGCGDesign primers
2228940CCATTAC-CCATTAC-CCATTAC-CCATTAC-CCATTACDesign primers
2246289GG-GG-AG-CG-GG-GG-AG-CG-GG-GG-AG-CGDesign primers
2252584ATCTCCCC-TGCTCCCC-TGCTCCCC-TGCTCCCC-TGCTCCCC-TGCTCCCC-TGCTCCCC-TGCTCCCC-TGCTCCCCDesign primers
2282531TCTGCCT-TCTGCCT-TCTGCCT-TCTGCCTDesign primers
2338820TCATCAAAGTCATCATCAAAGTCGTCTTCAAAGTCADesign primers
2370062CTTTATGTAGT-ATTTATGTAGT-ATTTATGTAGTDesign primers
2414602ACACCA-ACACCA-ACACCA-ACACCADesign primers
2420193TGGGTAA-TGGGTAA-TGGGTAA-TGGGTAADesign primers
2453985AATTACC-CATTACC-CATTACC-CATTACC-CATTACC-CATTACCDesign primers
2463514GCTCCCCC-GCTCCCCC-GCTCCCCCDesign primers
2721146CCGCACCC-CCGCACCC-CCGCACCCDesign primers
2730871AGACAAGGA-AGACAAGGA-AGACAAGGADesign primers
2737059ATCCCAA-ATCCCAA-ATCCCAA-ATCCCAADesign primers
2786770GGGGAGCT-GGGGAGCT-GGGGAGCT-GGGGAGCTDesign primers
2834033GCTCCCCC-GCTCCCCC-GCTCCCCC-GCTCCCCCDesign primers
2834073GCTCCCCC-GCTCCCCC-GCTCCCCCDesign primers
2882380ACTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
2899050CACCTCAG-CACCTCAG-CACCTCAGDesign primers
2902871AAGGCAGGAGGCAGAAGGCAGGGGGCAGAAGGCAGGAGGCAGAAGGCAGAAGGCAGDesign primers
2902943GGCAGGG-GGCAGGG-GGCAGGG-GGCAGGGDesign primers
2903020GGCAGAT-GGCAGAT-GGCAGAT-GGCAGATDesign primers
2938031AGGTTGGCTCCACTC-AAGTTGGCTCCACTC-AAGTTGGCTCCACTC-AAGTTGGCTCCACTC-AAGTTGGCTCCACTCDesign primers
2971978GCTCCCCT-GCTCCCCT-GCTCCCCT-GCTCCCCTDesign primers
3026856CCTAAA-CCTAAA-CCTAAA-CCTAAADesign primers
3031765AGGCAAA-AGGCAAA-AGGCAAA-AGGCAAADesign primers
3035470ACCTTCTACCTCCTGCCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTTCTACCTCCTGCCTTTTDesign primers
3104524TTTTGAC-TTTTGAC-TTTTGAC-TTTTGACDesign primers
3298499GGTGTTGGAGTCGGTGATGGAGTCGGTGTTGGAGTCGGTGTTGGAGCCDesign primers
3298841GAGGGTGAGGGTGACGGTGAGGGTGAGGCTGAGGGTDesign primers
3334188GCGGGGGT-GCGGGGGT-GCGGGGGT-GCGGGGGTDesign primers
3339611TTTGGTCATCAT-CTTGGTCATCAT-CTTGGTCATCATDesign primers
3339656TTTGGTCATCAT-TTTGGTCATCAT-CTTGGTCATCATDesign primers
3339864GCCAGAACCGGAGGCTGT-GCCAGAACCGGAGGCTGT-GCCCGAACCGGAGGCTGTDesign primers
3339919CCCGAACCGGAAGCTGTG-CCCGAACCGGAGGCTGTG-CCCGAACCGGAGGCTGTG-CCCGAACCGGAGGCTGTG-CCCGAACCGGAGGCTGTG-CCCGAACCGGAGGCTGTG-CCCGAACCGGAGGCTGTGDesign primers
3340458CGTGTTACCAGA-CGTGTTACCAGA-CGTGTTGCCAGADesign primers
3340495GTGCTGCCACCACCT-GTGCTGCCACCACCC-GTGCTGCCACCACCC-GTGCTGCCACCACCCDesign primers
3341082ATTATTGGTACCTGTGTTGGTTCCAGTATTGGTACCTGTGTTGGTTCCAGTATTGGTACCTGTATTGGTTCCDesign primers
3474013ACACGG-ACACGG-ACACGG-ACACGGDesign primers
3585220AGGGGGA-ATGGGGA-ATGGGGA-ATGGGGA-ATGGGGA-ATGGGGADesign primers
3667817CAAGAAGGCAGAAA-AAAGAAGGCAGAAA-AAAGAAGGCAGAAADesign primers
3681095ATATAGGAG-ATATAGGAG-ATATAGGAGDesign primers
3783947AACCTTCA-AACCTTCA-AACCTTCA-AACCTTCADesign primers
3791380CTTGATTCCTTTGATGAT-ATTGATTCCTTTGATGAT-ATTGATTCCTTTGATGATDesign primers
3807168CCCATGACCCATTACCGATGACCCATTACCGATGACCCATTADesign primers
3890443AGCAGGGGAGCGGGGG-TGCAGGGGAGCGGGGG-TGCAGGGGAGCGGGGGDesign primers
3890492GCAGGGGT-GCAGGGGT-GCAGGGGTDesign primers
3890523TGCAGGGG-TGCAGGGG-TGCAGGGG-TGCAGGGGDesign primers
3920020GGTAGATGGCAGAT-GGTAGATGGCAGAT-GGCAGATGGCAGATDesign primers
3934895GCTGATA-GCTGATA-GCTGATA-GCTGATA-GCTGATADesign primers
3962838GACAAGGGGGACAAAGAA-GACAAGGGGGACAAAGAA-GACAAAGGGGACAAAGAADesign primers
3964624AAGGCAG-ATGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
4047087AGAAGGCAGAAGGCAGGAGGCAGGAGGCAGAAGGCGGGAGGCAGAAGGCAGGAGGCAGGAGGCDesign primers
4140668CCCCAATG-CCCCAATG-CTCCAATG-CCCCAATG-CCCCAATG-CCCCAATGDesign primers
4166425TCCCTCCTGCCTCCTGCCTTCTGCCTCCTGCCTCCTGCCTTCTGCCTCCTGCCTCCTGCCTCCTGCCTCCTGCCTTCTGCCTTCDesign primers
4198972GG-GG-AG-CG-GG-GG-AG-CG-GG-GG-AG-CGDesign primers
4240277CTCCAA-CCCCAA-CACCAA-CCCCAA-CCCCAA-CCCCAADesign primers
4250414GGTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
4405063GCTTCCCTTCGGGACGCTTCCCTCCGGGACGCTTCCCTCCGGGACDesign primers
4598005GACGATGACAACGACCATGACAACGACCATGACAACDesign primers
4649195TACCCAGTCCGAATCCTT-CACCCAGTCCGAATCCTT-CACCCAGTCCGAATCCTT-CACCCAGTCCGAATCCTT-CACCCAGTCCGAATCCTTDesign primers
4655432ATTGGTAATTGGGCATTGGTGATTGGGCATTGGTAATTGGGADesign primers
4672292GGGAGTCGGTAAAACAGCAGGTGGATTCGGTAAAACAGCAGGTGGAGTTGGTAAAACAGCAGGDesign primers
4677047CCAAGC-CCAAGC-CCAAGC-CCAAGC-CCAAGCDesign primers
4717129CTCCCCCA-CTCCCCCA-CTCCCCCA-CTCCCCCADesign primers
4745225GGTATAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
4835513CCATTG-CCATTG-CCATTG-CCATTGDesign primers
4853312CTGCTCCC-CTGCTCCC-CTGCTCCC-CTGCTCCCDesign primers
4983275ATTCCCC-ATTCCCC-ATTCCCC-ATTCCCC-ATTCCCCDesign primers
5020831ATGGTC-ATGGTC-ATGGTC-ATGGTC-ATGGTCDesign primers
5105537GCCGAATTCATCGGCGTAGAA-GCCGAATTCATCGGCGTAGAA-GCCGAATTCATCGGGGTAGCADesign primers
5106940GTACTGGCTACCGGACTGGCTACCGGACTGGCTACCDesign primers
5111073GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
5111102GCAGGAG-GCAGGAG-GCAGGAG-GCAGGAG-GCAGGAG-GCAGGAGDesign primers
5167243GGTGCTGA-GGTGCTGA-GGTGCTGADesign primers
5174566AGAGCTTGAGCGCCG-AGAACTTGAGCGCCG-AGAACTTGAGCGCCG-AGAACTTGAGCGCCGDesign primers
5436591AAGTCAA-AAGTCAA-AAGTCAA-AAGTCAADesign primers
5583755AGCTCCCC-AGCTCCCC-AGCTCCCCDesign primers
5588105ACCGATTAG-ACCGATTAG-ACCGATTAG-ACCGATTAG-ACCGATTAGDesign primers
5599012TGCTGGGG-TGCTGGGG-TGCTGGGGDesign primers
5840417AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
5940578GGTGCTGA-GGTGCTGA-GGTGCTGA-GGTGCTGADesign primers
5954029GGGTGCGG-GGGTGCGG-GGGTGCGGDesign primers
5963867CAGGTTA-CAGGTTA-CAGGTTA-CAGGTTADesign primers
6079103GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
6131599AAAATCC-AAAATCC-AAAATCC-AAAATCCDesign primers
6303233ACCCATGCC-GCCCATGCC-GCCCATGCC-GCCCATGCC-GCCCATGCC-GCCCATGCCDesign primers
6310976CAGCTCCCCAGCTCCTCAGCTCCCAAGCTCCTCAGCTCCCCATCTCCTDesign primers
6335679GTTGGAGTGGGA-GTTGGCGTTGGA-GTTGGCGTTGGA-GTTGGCGTTGGA-GTTGGCGTTGGA-GTTGGCGTTGGADesign primers
6357006CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
6357874CCAACTCCTACACTAAGC-CCAACTCCTACACCAAGC-CCAACTCCTACACCAAGC-CCAACTCCTACACCAAGCDesign primers
6389491GGGGAGCA-GGGGAGCA-GGGGAGCADesign primers
6454360TTTCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTCDesign primers
6619906AGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
6659684CCGATTA-CCGATTA-CCGATTA-CCGATTADesign primers
6689461GGACAAGGG-GGACAAGGG-GGACAAGGGDesign primers
6764086TCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
6801535ATAGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
6822770CTATTAC-CTATTAC-CTATTAC-CTATTACDesign primers
6824580TGCCTG-TGCCTG-TGCCTG-TGCCTGDesign primers
6854756TGGGGAGCGGGGGAGCTGGGGAGCTGGGGAGCTGGGGAGCGGGGGAGCDesign primers
6906088TGCCAACCTCAGTGGTGCCAACCTCAGTAGTGCCAACCTCAGTGGDesign primers
6944237ACATTAC-CCATTAC-CCATTAC-CCATTAC-CCATTAC-CCATTACDesign primers
7003372TGCCCTA-TGCCTTA-TGCCTTA-TGCCTTA-TGCCTTA-TGCCTTADesign primers
7022292TCTGCCT-TCTGCCT-TCTGCCT-TCTGCCTDesign primers
7028321GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
7084380CATTACC-CATTACC-CATTACC-CATTACCDesign primers
7126225TCCACTCAAGTCTGC-GCCACTCAAGTCTGC-GCCACTCAAGTCTGC-GCCACTCAAGTCTGC-GCCACTCAAGTCTGCDesign primers
7259018TCACTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTC-TGCCTTCDesign primers
7344831CCATTAC-CTATTAC-CTATTAC-CTATTAC-CTATTAC-CTATTACDesign primers
7362405TCAGCTCGCTGGTGTTCTTGTTCAGCTCGCTGGCGCTCTTGTTCAGCTCGCTGGCGCTCTTGTDesign primers
7421586GACAAGGGG-GACAAGGGG-GACAAGGGGDesign primers
7441254TCAACGAATATCCCATCAACGGATATCCCATCAACGAATATCCCATCAACGGATATCCCADesign primers
7441315CAACGGATGTCCCATCAACGGATGTTCCATCAACGGATGTTCCATDesign primers

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