Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Synechococcus sp. PCC 7502

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
35876	CCCCAAATTAGTCCGCAGATTAGTTCCCAAATCAGT	Design primers
73339	TACAGATATAGATACATATCCAGA	Design primers
176388	TTCTTACTTTTTTGCTTGCTTTTTTTCTTGCTTATT	Design primers
235625	AGTTTAAGGAGTTGTTTGAGGAGTTGTTTGAGGAGT	Design primers
254904	TGCCGCCATTACCGCCATTGCCACCAT	Design primers
257510	TTGATTACTTTGATTATTTTGAGTACT	Design primers
307640	TTCAAATTTTCAGTCAAATTTTTAATCAAATTTTAA	Design primers
370663	TTTACTGAATTTTGCTCAATTTTGCTCAAT	Design primers
372782	TTTACTTAAATTTAGTTAAATTTACTGGAA	Design primers
403287	TATTATTTTATATTAAATTATAGTA	Design primers
411934	CAAGATCAACATCAGGATCAAGAT	Design primers
440912	GAATCACAAAAGAATCACAAACGAAGTACAAAA	Design primers
449323	CTGTCC-TACACC-TACACC-TACACC-TACACC-TACACC-TACACC-TACACC-TACACC-TACACC-TACACC-TACACC	Design primers
452346	ATCTAAAAATTTCTAAGAATTTCTAAAAAT	Design primers
457415	ATTTAAACTTAAATTTAGAGTTAACTTTAAAATTAAATTTAG	Design primers
490384	AGTCAATTTAATAGTCAATTAAACAGCCAATTTATT	Design primers
539230	TTGTTAATAAATCTGGTCAATAAATCTGGTCAATAAATC	Design primers
651922	CTTCTCAACAACTGTCTCAACAACCGTCTCAACAAG	Design primers
724762	ATTTAATTGGGGCAGATTTAACGGGAGCAGATTTAACGGGAGCAG	Design primers
730084	TAAAATCTCA-TGTAATCTCA-TGTAATCTCA-TGTAATCTCA	Design primers
772101	ACTAACTTAATAACTTATTAACTT	Design primers
792153	GGCAGATAAAAGCACAGATAAAAGGGCAGATAAAAA	Design primers
814886	TAATCTCCTTCTAATTTTCTTCCAATCTCCTTA	Design primers
834432	ATAAACCACTATAAACCGTTATTAACCAGT	Design primers
894862	TACAGGAAATGCAGGAAATGCAGGAAA	Design primers
908162	GCATTACTAAGGTTGGCATTACTAAGATTGGCATTATTAAAATTG	Design primers
908218	GTTGGTTCCACTTAGATCGGCTCCACTTAGATCGGCTCCACTTAG	Design primers
912572	TTTTAATTTTTGATCTTGATTTTTGATCTTGATTTTTGA	Design primers
967934	ATTAATCTCTGCATTTAATTTCTGCAATTAATCTTTGCA	Design primers
972142	GCTTAAATTGGCATTCTTTAAATTGGCATAGATCAAATCGGCATT	Design primers
1015074	TTAGCTTGTAAGTTAGTTTTTAAGTTAGCTTTTGAG	Design primers
1056151	CAAAAATAAAACTAAAAGTAAAACCAAAACTAAAAC	Design primers
1087233	TGCTCATACTCATGGTCAAGCTCA	Design primers
1117452	TCATAATTTTCAAGAACAGAATCTTCAAGAACAGAATCTTCAAGA	Design primers
1182174	TTAAATTTTTTAATTTTTAAATTT	Design primers
1244003	ATTTTTAGATAATTTTTAGGTGATTTTCAAATA	Design primers
1271439	TTTTTATTTTTTTACTTGTTTATT	Design primers
1376069	TTATTTGCTAACTTATTCGCTAACTTATTGGTTAAC	Design primers
1446180	AAAATTTACAAAACAATTTACAAAAGAATTTACGAA	Design primers
1446968	AAATGACTGAAAAACTTACTGAAAAAGTGATTGAAA	Design primers
1477264	AAGCTCAGTTTTAAGTTCACTTTTAAGCTCATTTTT	Design primers
1544426	AATTAAACATTCAAGTAAGCATTCAAATAAACAATC	Design primers
1595551	AATTTAAATTAAAAATTAAATTAA	Design primers
1620700	CAACCTCCACAAGCTCCACAACCTCCACAACCTCCA	Design primers
1633368	CTTTAATTTTGTGACTTTAAATCTGTGATTTTAATTTTGCGA	Design primers
1678412	CTCAAA-CTCAAA-CTGAAA-TTCAAA	Design primers
1701059	AACTGATAAATGATAACTAATAACTGAT	Design primers
1752463	CGGTGAGATTACTGTGGGATTACGGTAAGATTG	Design primers
1802820	CAAAATCAAATTGAAAATCAAGATCAAATT	Design primers
1874361	ACTAAAATTTTTCTAACTAGAACTTTTGTATCTAGAACTTTTCTA	Design primers
1938467	TGGTAATGGCAATGGAAATGTTAA	Design primers
2047469	CTAATTTTTTCTAAATTTTCCTAAATATTT	Design primers
2074804	ACCTTCTTGGCGACCCTCTTGGCGACCCTCTTGACG	Design primers
2202735	TTAAAAATAAAATAAAAACTAAAA	Design primers
2291079	CCACTGATATACACCTGATATACAACAGATATA	Design primers
2315773	ATATAAATTCAAGCTAGAAATTCAAGCTAGAAATTCAAG	Design primers
2323148	TTCCAAGATTCCCAAGATTTTCAAGAT	Design primers
2438115	TAGAAATTTAGAATCGAACTTTAGAATTGAAATTTAAAA	Design primers
2439621	ATTTGATCTATTTGTTCTAATTGATCT	Design primers
2442699	TAGATTTAAATTTTGATTTAGATT	Design primers
2512332	TTTACAGTTTTTTTACACTTCTTTTACAGTATT	Design primers
2524162	AATTGCAATTGGAACTGCAATTGG	Design primers
2546786	AGATTCAAGAGATGATTCAAGAGGCGATTTAAGAGA	Design primers
2570262	TCTGGCTAAATTCCGACTAAATTCTGACTAAAT	Design primers
2622523	TTAATCCCCATTCATACCCATTAGTTCCCA	Design primers
2670984	TTTTATATTTGTTTTTTGTTTGTTTTTTGTTTG	Design primers
2708404	CCCTGAGGTTAGCGCCACTAAGGTTAGCTCCCTTGAGGTTAGCGC	Design primers
2811487	TAGCTTTAGCTCTATCTTCAGCTT	Design primers
2866981	TAAACCAATTACACCAATTAAAACAAT	Design primers
2880124	CTGAAAATTAACCGAAATTTAACTGAAAATTAA	Design primers
2904827	TACAAATTTAATTACAGATTTCATCACAAATTTTAT	Design primers
2961312	TGAGGCTAAGGCTGAAGCTGAGGC	Design primers
3001835	AATTAAAGTTAATCAGAGTTATTTACAGTT	Design primers
3048115	ATATTACTAAATCTTACGAAATATTACGGA	Design primers
3265141	CTCTAAAGG-CTCTAAAGG-CTCTAAGGG	Design primers
3265909	ACTTAAATTTGCCCCACTTAAATCTGCTCCATTTAAATTAGCACC	Design primers
3278264	CATCACAGTTTCATCAGAGATTTATCACAGGTT	Design primers
3297879	TACTTTTGGATACCTTTTGATATTTTTTGA	Design primers
3312462	TGGTTGTGGTAGTAGTTGTAGTTG	Design primers
3327642	TTCCGTAAATATGGTTATGTAAATATGGTTATGTAAATATGG	Design primers
3341648	GCCTCTAGTTTTTGCCTCTGGTTTTTGTCTTTAGTTTTT	Design primers
3451580	ATGTGCCAATTGATACGCCAATTGATATGCCCATTG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

35876

CCCCAAATTAGTCCGCAGATTAGTTCCCAAATCAGT