Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Pleurocapsa sp. PCC 7327

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
11425	GTTAGTG-GTTAGTG-GATAGTG-GTTAGTA	Design primers
11534	AATTCCGACTTCCGAATTCCGACTTCCG	Design primers
29982	AA-GA-AA-GA-GA-AA-AA-GA-GA-AA-TA-AA	Design primers
41729	GTTGCA-ATTGCA-ATTGCA-ATTGCA	Design primers
52146	TTGTCCTTTGTCATTTGTTCTTTGTCCT	Design primers
98133	TTCACCCAGTCTCCCAGTCTCCCAGTCTCCCAGTCTCCCAGTCTCTCA	Design primers
103017	CTAAGGACTAATGACTAAGGACAAAGGA	Design primers
133585	TTAGTAGTTAGTAATTAGCAGTTAGTTG	Design primers
141222	CATTAGTCATTGGTCATTAGTCATTGGTCATTAGT	Design primers
141260	ACAAATGACAAGTGACAAAGGACAAATGACAAATG	Design primers
155150	AAGGAAAAGGAGAAAGAAAGGGAA	Design primers
303513	TAGTTTCTCCAAATTATAAACAGTCTTTCCAAATTGTAAACAGTTTTTCCAAATTGTAAA	Design primers
329614	ATGAATTCTGAATTTTGAATTCTGAATT	Design primers
362547	GTCATTGGTTATTGGTCATTTGTCATTT	Design primers
362586	AATGACA-AAGGACA-AAGGACA-AAGGACA	Design primers
370259	CTAACGACTACCGACTAACTACTAACGA	Design primers
401729	CCTTTGTTCTTTGTCATTTGTCCTTTGT	Design primers
437569	CAATTCACAATTCGCAATTGACAATTCG	Design primers
490394	TAACGAC-TAACGAC-TAACCAC-TAACCAC	Design primers
499739	TCCTTTG-TCATTTG-TCATTTG-TCATTTG-TCATTTG	Design primers
533332	AGTAGTTAGTTGTTAGTAGTTATTAGTTAGTGGTT	Design primers
533412	ACTTCCGAATTCCGAATTCCGACTTCCC	Design primers
548466	TACTGATAACTGATAACTGATTACTGATTACTGAA	Design primers
561328	AATTGTT-AATTGTT-AATTATT-AATTGTG-AATTGTA	Design primers
563414	AAGTCAGAAGTCGGAAGTCGGAAATCAG	Design primers
575901	TGGCAGAGA-AGGCAGAGA-AGGCAGAGA	Design primers
577745	TAACCAATAACTAATAACCAATAACTAA	Design primers
581931	CCCCCCTACCCCCCAACCCCCCTT	Design primers
582002	CGGGGGGGATCGGGGGGATTAAGGGGGGAT	Design primers
621563	CCCTCTGC-GCCTCTGC-GCCTCTGC	Design primers
642010	AGTAGTTAGTAATTAGTTGTTAGTAGCT	Design primers
695480	TTTATCA-GTTATCA-GTTATCA-GTTATCA	Design primers
785202	TCTTGGA-TTTTGGA-TTTTCGA-TTTTGGA-TTTTCGA-TTTTGGA	Design primers
786198	AGTTCAAAATTCAAAGTTCAAAGTTCAA	Design primers
788927	TCTCTTTGTCTCTGTGTCTCCTTG	Design primers
794038	GAATTGCGAATTGTAAATTGCGAATTGG	Design primers
798745	GGGGGTGTGGGGAGTGTGGGAGGTGTG	Design primers
798813	CCAATAA-CCAATAA-CCAATGA-CCAATGA-CCAATGA	Design primers
862304	CTAATAACTAATGACTAATGACTAAAAA	Design primers
867933	TTGTTAG-TGGTTAG-TGGTTAG-TGGTTAG	Design primers
888822	ATTAGTCATTAGTTGTTAGTCATTTGTC	Design primers
888870	ACAATTGGCAATTGCCAATTGGCAATTGCCAATTG	Design primers
904918	TAGTTAGTGGTTAGTAGTTAGTGGTTAG	Design primers
928614	CTAACCACTATCCATTAACCACTAACCA	Design primers
929958	AATTCCGAATTCCTAATTCAGAATTCCG	Design primers
934726	CTTGTCCCCTTGTCTCCTTGTCTC	Design primers
957775	TAACCACTAGCCACCAACCACTAACCAC	Design primers
965632	TTTGTCATTGGTCATTGGTCATTTGTCCTTTGTCC	Design primers
965723	CCCACACTC-CCCACACTC-CCCATACTC	Design primers
996344	GAATTGTCAATTGTGAATTGCGAATTGA	Design primers
999505	GAATTCGGAAGTCGGAATTCGGAATTAG	Design primers
999542	ACTACTA-ACTACTA-ACCACTA-ACCACTA-ACTACTC	Design primers
1017727	ACTAACTACTATCTACTAACTTCTAACT	Design primers
1057764	GACTAAT-GACTAAT-GACCAAT-CACTAAT	Design primers
1063497	ATTGGTTGTTGGTTATTAGTTCTTGGTT	Design primers
1074479	ACAAATGACCAATGACTAATGACAAAGG	Design primers
1089462	TTGTTAG-TGGTTAG-TGGTTAG-TTGTTAG	Design primers
1114706	ACTACCA-ACTACCA-ACTACTA-ACTACCA-ACTACTA	Design primers
1127619	ACTTCCGATTTCCGACTTCCGACTTCTGACTTCTG	Design primers
1130682	GCCCATGCCACCCATGCCGCCCATACCACCCATGCC	Design primers
1136416	TAAGTAGAAAAGAGTAGAAATAAGTAGAGT	Design primers
1165402	ACGACTA-ACCACTA-ACCACTA-ACCACTA	Design primers
1278181	GTTAGTAGATAGTAGTTAGTAGATAGTA	Design primers
1278251	GTCTCCGAGTCTCCCAGTCTCAGA	Design primers
1290556	GCGAGGAGAAATGATTG-GCGAGCGGGAATGATTG-GCGAGCGGGAATGATTG-GCGAGCGGGAATGATTG-GCGAGCGGGAATGATTG-GCGAGCGGGAATGATTG-GCGAGCGGGAATGATTG-GCGAGCGGGAATGATTG	Design primers
1290788	AATCGCTAATTGCTAATCACTAATCACT	Design primers
1302488	CCTTCTG-ACTTCTG-ACTTCTG-CCTTCTG	Design primers
1305404	CTTTACTTAATTTTTCTTAAATTTAATTAA	Design primers
1312648	GGCTTTGGCTGTCTTTCGCTGGTTTTGGGT	Design primers
1313543	ATGTTCTTTATGTACTTTATGTACTTT	Design primers
1444541	CCAAATTTAGCAAAATATAGTCAAATTTAG	Design primers
1565799	TTTGAACTTTGCACTTTGAATTTTGAAT	Design primers
1601352	TAGTTCA-AAGTTCA-AAGTTCA-AAGTTCA	Design primers
1629651	CCCGTCTCCCAGTCTCCCCGTCTC	Design primers
1649797	ACTAACTACTAACCACAAACTACTAACA	Design primers
1649835	TAATTAC-GAATTAC-GAATTAC-GAATTAC	Design primers
1726717	TAATTGG-TCATTGG-TCATTGG-TCATTGG	Design primers
1737886	GAAGTCGCAAGTCGGAATTCGGAATTCG	Design primers
1745858	AGTTCAA-AGTTCAA-AGTGCAA-AGTTCAA	Design primers
1807290	GA-GT-GT-GG-GA-AG-TG-TG-GG-GA-GT-GT-GG-G	Design primers
1838515	TAGCAATTTGCAATTGGCAATTATCAATTCGCAAT	Design primers
1904471	GCCTTCGCCACCTTCATCGCCTTCGCCACCTTCGCCACCTTCGCCGCCTTCACC	Design primers
1910753	ACCAAAAAAATCCAAAATAAATCAAAAAAG	Design primers
1966390	TAATCCCCC-CAATCCCCC-CAATCCCCC	Design primers
1997903	CAAATGA-CCAATGA-CCAATGA-CCAATGA	Design primers
2008745	ATTAACTATCAACTAATAACTACTAACT	Design primers
2071567	GGTTAGTCGTTAGTGGTTACTGGTTAGT	Design primers
2099893	ACTTCCG-ACTTCCG-AGTTCCG-ACTTCCG	Design primers
2102978	TTTTTCCTTTTTACTTTTACCTTTTTAC	Design primers
2170109	AATCTAA-AATCCAA-AATCCAA-AATCTAA	Design primers
2170824	AGAACGGAC-ATAACGGAC-ATAACGGAC-ACAACGGAC	Design primers
2187051	AATAATT-AATAATT-TATAATT-CATAATT	Design primers
2241444	TGGTTAGTGGTTATTCGTTAGTGGTTAA	Design primers
2260516	ACTAATA-ACTGATA-ACTGATA-ACTGATA	Design primers
2300254	TTGTCCTTTGTCTTTTGTCCTTTGTCAT	Design primers
2303193	AATTTTTTTATATTTTTTTAATTCTTTTTTTAT	Design primers
2316742	CCCAGTCTCCCACTCTCCCAGTCA	Design primers
2345212	TCAGTAATTAGTAATCAGTAATCAGTAG	Design primers
2351223	GAATTCGGAAGTCGGAAGTCGGAATTAG	Design primers
2356649	ACCATTACCTTTACCATTACCTTT	Design primers
2358294	AATCCAA-AATCCAA-AACCCAA-AATCCAA	Design primers
2363652	TAACAACTAACTACTAACAACTAACTAC	Design primers
2409960	GTTATTTCCTCCATTGTTGTTTCCTCCATTATTATTTCTTCTATT	Design primers
2410646	AATGATGAAGGATGAATGCTGAATGATG	Design primers
2412697	AATAAAT-TATGAAT-TATGAAT-TATGAAT-TATGAAT-TATGAAT	Design primers
2417675	TAATAAT-GAATGAT-GAATGAT-GAATGAT-GAATGAT-GAATGAT	Design primers
2443603	TGTGGCTTTAGCTTGAGTCGCTTTAGCTTGAGCCGCTTTAGCTTG	Design primers
2460922	ATTAACT-ACTAACT-ACTAACT-ACTAACT-ACTAACT	Design primers
2495624	TTCATAATTCACAATTCATCATTCAGAA	Design primers
2498045	ATTAGTT-ATTGGTT-ATTGGTT-ATTAGTT	Design primers
2513151	CCCACACTC-CCCACACTC-CTCACACTC	Design primers
2527969	CCCCACACTTCCCACACTCCCCACACT	Design primers
2570279	GTTAGTG-GTTAGTG-GTTGGTG-GTTAGTT	Design primers
2581972	TAGCAAT-TCGCAAT-TCGCAAT-TATCAAT-TCGCAAT	Design primers
2618474	GTTTCCCCATTTCCCCGTCTCCCC	Design primers
2620956	TAATGAC-GAATGAC-GAATGAC-GAATGAC-AAATGAC	Design primers
2716270	TTCATAA-TTCATAA-TTTATAA-TTCATTA	Design primers
2717039	AATGATT-ACTGATT-ACTGATT-ACTGATT	Design primers
2719264	ATCAGTTATCGGTTATCAGTTATCAGTT	Design primers
2740441	GTGGAAAATAGTAGAAAAAAAGGGAAAATA	Design primers
2787661	ACCACCATCACCATCACCACCACG	Design primers
2809876	CTCAAATCGGCACCGCTCAAATTGGCTTCGCTCAAATTGGCGGCG	Design primers
2840598	TAACCAC-TAACCAC-CAACCAC-TAACTAC	Design primers
2851979	TATCGAGATGACTACCAAGATGACTACCGAGATAAC	Design primers
2863254	ATAACTGGTAACTGGTAACTGATAACTA	Design primers
2886971	AACTTAAATTAACTTAAATTAAATT	Design primers
2893895	AATAACA-ACTAACA-ACTAACA-ACTAACA-ACTAACA	Design primers
2899138	TACTAACCACTAACTACTGACTACTAAT	Design primers
2931454	TACAAGGAGCCAATCTAGCGGGAGCCAATCTACAAGGAGCCGATT	Design primers
2946424	GTTGGGTTAGGTTTGGATGGGTGGG	Design primers
2950595	CCGTTG-CCGTTG-CCATTG-CCGTTG	Design primers
2963586	CGTAT-GGTGC-GGTGT-AGTGT-GGTGT-GGTGT-GGTGT-GGTGT-GGTGT	Design primers
2963632	GTGCAATAGGTTGTG-GTGCAATAGGTTGTG-GTGCAATAGGTTGTG-GTGCAATAGGTTGTG	Design primers
2993089	GAATTGTTAATTGTTAATTGTGAATTGC	Design primers
2999125	AAGGACT-AATGACT-AATGACT-AATGACT	Design primers
3025071	ATTAACCACTAACCACTAACCATTAACA	Design primers
3193847	CCATCCCGATCCCAATCCCCATGC	Design primers
3230073	GAAGTCGGAAATCGGAATTCGGAATTCGGAATTCGGAAGCCG	Design primers
3232915	AGACAAAAAAGGCAAAAAAGACAAAAAAGACAAAAA	Design primers
3233088	AACCACTAACTACTAACTACTATCCACT	Design primers
3264759	ATTTTGA-ATTTTGA-ACTTTGA-ATTTTGA	Design primers
3286972	AAGTTCAAATTTCAAAGTTTAAAGTTCA	Design primers
3408133	TAACTACTAACCACTAACTACTAACTAC	Design primers
3409464	TCAGTTATCAATTATCTGTTATCAGTTATCAGTTT	Design primers
3530311	CTACTAA-CTACTAA-CTATTAA-CGACTAA-CTACTCA	Design primers
3535394	AACTGAAACGGAAACCGGAACGGAAACCGGAACGGA	Design primers
3548292	GTCATTTGTCCTTTGTCATTGGTCATTG	Design primers
3562837	TAGCAATTCGCAATTGGCAATTATCAATTCGCAAT	Design primers
3582259	GTCATTTGTCCTTTGTCATTCGTCCTTT	Design primers
3582296	ACTAATG-ACCAATG-ACTAATG-ACTCATG-ACGAATG	Design primers
3658687	AAACGAGAACAAGCTGAACGAGAACGAGATGAACGAGAACGAGCC	Design primers
3672261	TTTGTCCTTTGTCGTTTTTCCTTTGTCA	Design primers
3703061	AATAACTAAGAACTAATAACAAATAACT	Design primers
3717567	TCAATCGCTTCGATCGCTTCAATCGCT	Design primers
3721971	ACCAATG-ACCAATG-ACCGATG-ACCGATG	Design primers
3724619	ACCAATG-ACCGATG-ACCGATG-ACCGATG-ACCGATG	Design primers
3739695	AAAAGAAAAAAAGGAAAAAGGAAA	Design primers
3746634	CACTGATTACTGATAACTGATTACTGATAACTGAT	Design primers
3749002	ACTAACTACTCACTACTAACAACCAACTACTAAAT	Design primers
3749949	TGTCATTTGTCATCGGTCATTAGTCATT	Design primers
3767293	ACTAACACCTAACAACTAACAACTAACC	Design primers
3771091	ACTAACTACCAACTACTAACTACTACCT	Design primers
3773190	GACAAATGACAAGTGACAAAAGACAAAGGACAAAA	Design primers
3774687	GACTTCCGACTTCATACTTCCGACTTCA	Design primers
3794297	TCGCAGAGACGCAGAGGCGCAGAG	Design primers
3815374	TCTCCCCA-TCTCCCCA-TCTCCCTA-TCTCCCTA	Design primers
3826663	AATTCCGAACTCCGAATTCCAAACTCCG	Design primers
3843066	GCACCACTCAAATCGGTTTCACTCAAATCGGCTCCACTTAAATCA	Design primers
3866764	CTCTCCCTCTCTCTTTCCCTCCCC	Design primers
3988164	ACTGATAACTGATTACTGACAGCTGATA	Design primers
4027745	ATTAGTTACTAGTTATTAGTTAGTAGTT	Design primers
4042846	AGACTGGGAGACGGGGAGACGGGG	Design primers
4074052	AATTTCTACTTATTTCTACTATTTTCCACT	Design primers
4078789	TAATTTCTACTTACTTCTACTATTTTCCAC	Design primers
4108424	GGGAGACGAGGAGACGGGGAGACA	Design primers
4136478	GTTCGGAGTTTGGAGTTCGGAGTTCGGA	Design primers
4139630	GTCTCCCTT-ATCTCCCTT-ATCTCCCTT-ATCTCCCTT	Design primers
4197483	GTCGCGAGCAGGAATGA-TTGGCGAGCGGGAATGA-TTGGCGAGCGGGAATGA-TTGGCGAGCGGGAATGA-TTGGCGAGCGGGAATGA-TTGGCGAGCAGGAATGA-TTGGCGAGCGGGAATGA-TTGGCGAGCGGGAATGA-TTGGCGAGCGGGAATGA	Design primers
4211141	TTTTGAA-CTTTGAA-TTTTGAA-TTTTGAA	Design primers
4229691	GCGAATT-GCAAATT-GCAAATT-GCAAATT	Design primers
4246574	CCCTCTGCCTTCTGCCCTCTGCCTTCTG	Design primers
4248410	CCACTAACTACTAACCATTAACCACTAA	Design primers
4249894	GACAAATGACCAATGACAAAGGACAAAT	Design primers
4272766	ACAAATGACCAATGACAAAAGACAACTG	Design primers
4279068	ACAAGGAGATGGGGAGATTGGGAGATGGGGAGATTGGGAGATGGGGAG	Design primers
4282973	AATGACAAAGGACAAATGACAAAGGACA	Design primers
4314009	TGGTTAGTCGTTAGTAGTTAGTGGTTAA	Design primers
4332096	TCCCCAGT-TCCCCAGT-CCCCCAGT	Design primers
4362954	AAAAGTAAAAAGGAAAAAATAAAAAGGAAAAAGTA	Design primers
4368280	TAGTAGTTAGTGGTTAGTAGTTAGTAGT	Design primers
4372072	TTTGTCATTGGTCATTGGTCATTTGTTA	Design primers
4420519	CTTCTGCCTTTTGCCTTCTGCCTTCTGC	Design primers
4431511	CAAATGACTAATGACAAAAGACAAAGGACAACTGA	Design primers
4449096	CTTCGTCTTCGCCTTCTTCTTCGT	Design primers
4469125	GACAAATGACCAATGACCAATGACAAAA	Design primers
4531772	AAGAATT-ATGAATT-ATGAATT-ATGAATT	Design primers
4546331	TTATTGTTGTCATTGTTGTCATTGTTG	Design primers
4558972	ATAACTG-ATATCTG-ATATCTG-ATATCTG	Design primers
4609782	GCAACA-GCAACA-ACAGCA-GCACCA-GCA	Design primers
4615042	TTGCGAATTGCAAATTGTGAATTGCGAA	Design primers
4690550	AAATTATTAAAAATAAATAAAAATTGTTAT	Design primers
4762073	ATGACTA-ATGACTA-ATGACAA-AGGACTA	Design primers
4806644	AATCCAA-AATCCAA-AATCTAA-AATCGAA	Design primers
4813440	ACCACTCCCGATACGACCACTCCTAGTACGACCACTCCCAGTACG	Design primers
4868951	TTTGTCATTTGTCCTTGGTCATTGGTCA	Design primers
4873647	AACCAATAACAAATAACTAATAACAAATAACCAAT	Design primers
4881906	GGGAGACTCGGAGACTGGGGGACTCGGAGACT	Design primers
4924991	GGCTTCTGTTAAATCTGCTTCGCTTAAATCGGCACCTTTTAAATC	Design primers
4979019	AGAGGCAAAAGGCAAGAGGCAAGAGGCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

11425

GTTAGTG-GTTAGTG-GATAGTG-GTTAGTA