Microsatellites /Tandem Repeats database

Genome: Thalassobaculum sp. L2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
21888ATTTATTATTTATTTAATACTTTTTTATTATTGDesign primers
24718TATTAATATCAATATTAGTATTAGDesign primers
59712TAATA-TAATA-GAATA-TAATT-TACTADesign primers
209158ATCGACGTCAGTCGACGTAAATCGCCTTCADesign primers
281603CAATCATAACAAACATAACAACCATAADesign primers
343125TAATATATCTAAATATATTTTAATATATGADesign primers
352272CATGGC-TATGGC-TATGGC-TATGGCDesign primers
355139ATATTATTTAATATCATTAAAAACTATTTADesign primers
384735TAA-TAA-TAA-AAA-AAA-TAA-TAA-AAADesign primers
434208TTATCAGTTTTTTAATATCTATTAGAAGAGTTTTAATATCTATTAGAAGAGTTTTAATATCTADesign primers
472139AA-TT-AT-AA-AA-AT-TA-TC-AA-AA-AT-AT-AA-ADesign primers
499935TTTATTTTTTTTTAAATTATTTTACDesign primers
566573AAAAATACTAAAAATTATTATACAATACTADesign primers
573985ATAATATTGAATAATACTAAATAATACTAADesign primers
613463AATGT-AGTGT-AGTGT-AGTGT-AGTGTDesign primers
669075TTATTTTAAGATTATTTTTATATTATCTTAGGADesign primers
669591AAAATTAAATTTATAATTATAATTDesign primers
777096CTTAAATTAACTTTACTTATCTGAADesign primers
811834CAAAAAATAACAAAATATGACAAATAATAADesign primers
929886TTTTAATTTCAATATTAATTTTATDesign primers
962205ATAAAAATATAAAATTAAAAAAATDesign primers
1038963TAATATTTTATAAAAATTTATCCTATTTTADesign primers
1121739AAA-CAA-CAA-CAA-CAA-CAA-CAA-CAADesign primers
1121764AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
1155477TAAAATCAAAATAAAAATTATAATDesign primers
1281054ATTTA-AATTA-AATTA-CTTTA-AATTADesign primers
1294761ATTAAATTCAATTACATCAAATTATDesign primers
1353996TAAATTTAAGTTTAAATTTTAATTTAATTTDesign primers
1370066ACTCTAAACCAATGGTTACTTCTGTTACTGAACCAATGGTTACTTCTGTTACTGAACCAATGGTTACTTCTGDesign primers
1382654CCACTGATGTAAGTG-ATCCTGATGTAAGTG-ATCCTGATGTAAGTG-ATCCTGATGTAAGTG-ATCCTGATGTAAGTGDesign primers
1390488TTAATTAATATCAATTAATTTTAAATTATADesign primers
1464016ATTAAAATAAATTATATTCACTTAADesign primers

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