Microsatellites /Tandem Repeats database

Genome: Methanolobus psychrophilus R15

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
154108AGCCGCGGCTAAAGTCACGGCTAAAGTCACGGCTAADesign primers
154458CCAAGTCGGGACCACGTTGGGACCATGTAGGGADesign primers
154529TCACCGACCCAGTTATCGACCCAGTCGCCGACCCAGDesign primers
154609CAAACAAGTAAGCGAACAAGTAGGCGAACAAGTAGGCGAACAAGTAACDesign primers
190834TTTGCT-TTTGCT-CTTGCT-TTTGATDesign primers
276090TCCCAGTTGAAGAGCCTCCAGTTGAAGAACCTCCAGTTGAAGAGCDesign primers
315733GGCATTAGGGCATTAAGACATTAGDesign primers
375794CAATCTGTGTTAATCTGTGTAAATCCGTGTDesign primers
375893CAGATTAACACGGATTTACACGGATTAACCDesign primers
473807GGAGTATTATCAGAGGTATTATCAGGAGTATTATGADesign primers
491457ACACAGATTTACACAGATCAACACCGATCTDesign primers
537121ACC-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
558246ACAATG-CCAATG-CCAATG-CCAATGDesign primers
561373CCCCCCACTCCCCCCACTCCCCCCAATDesign primers
566719TTGGTTCTTTTTCTA-CTGGTGCTTCTTCTA-CTGGTGCTTCTTCTA-CTGGATCTTCTTCTADesign primers
566832GTTTCTTCCACTGGTGCTTCTTCTACTGGTGCTTTTTCTACTGGTGCTTTTTCTACTGGTACTTCTTCCACTGGADesign primers
566914CTATCGGAGCTTCTTCTACCGGAACTTCATCTATCGGTACTTCATDesign primers
621528CATGTCTTCCATGTCCTCCATCTCTTCDesign primers
626452TTATTT-TTATTT-CTATTT-TTAATTDesign primers
627016ATC-TTC-TTC-ATC-CTC-TTC-ATC-CTC-TTCDesign primers
627910CTTCATCCT-CTTCATCCT-CTTCATCTTDesign primers
629003TCATCTTCAGATTCGACATCT-GCATCTTCAGATTCGACATCT-GCATCATCAGATTTGACATATDesign primers
690235TCATTTTACCCACATTTTACCTACATTTTGCCCDesign primers
737025GACACAGATTTACACCGATTAACACGGATTDesign primers
737091AAATCGGTGTAAATCAGCGTTAATCCGTGTDesign primers
948177TTGG-TTGG-TTGG-TTGG-GTGG-TTGGDesign primers
1098956ATAGGTAGAAGATGACGACCCATCGTCAGAAGATGACGACTCATCGTCAGAAGATGACGACCCDesign primers
1182474GAAGAAAATGAAGGAAATGAAGGAAATDesign primers
1391656GCCTGT-GCCTGT-TCCTGT-GACTGTDesign primers
1413813CCAATAACTACCAATAGCTACCAAAAAGTADesign primers
1467768GAATCCGTGTAAATCGGTGTTAATCCGTGTDesign primers
1468632CCTGGAGTTTCATCAACTGGGGTCTCATCAACTGGAGTCTCATCGDesign primers
1482650GCA-GCA-GTC-GCA-GCA-CCA-GCA-GCC-GCA-GCA-GCA-CCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-CCADesign primers
1594158GAACATACATCATCATACATCATCATACATDesign primers
1939378TTCTT-TTCTT-TTCCT-TTCTC-TTTTTDesign primers
2017652TCTTCATCTACTGGTGCTTCTTCGTCTACCGGAGCTTCATCATCCACTGGTGCTTCTTCATCTACCGGTGCTTCATCATCCACTGGTGCTTCTTCGTCTACCGGTGCTTCATCATCCACTGGAGCTDesign primers
2018848CATTCCCATCTGTGACATTGTCATCTGTAACATTGTCATCTGTGGCATTGTCATCTGTAADesign primers
2019363TCTTCAACCGGTGGCTCTTCCACTGGAGGCTCCTCAACAGGTGGTTCTTCAACCGGTGGCDesign primers
2055374GGCCACCCGGAAA-AGCCACCCGGAAA-AGCCACCCGGGAADesign primers
2162830AAACTTCGGGGG-TGACTTCGGGGG-TGACTTCGGGGGDesign primers
2183458ATAACAGAGGCGGAAATAGCAGAGGCGGAAGCAGCAGAGGCGGAADesign primers
2193475CTTAGTTTGGACTATGCTGAGTCTAGACTATGCTTAGTTTAGACTATGDesign primers
2314735AAT-AAT-ATT-AAT-AGT-AAT-ATT-AATDesign primers
2510889TATGGGAGGTATGGGGGGCATGGGAGGDesign primers
2540828GCAGCTGGAAGAGCAACTGGAAGGCCAGCCGGAAGADesign primers
2657514ATTACAATATTATTACAATGATATTACAATTATDesign primers
2735230GATAACGAT-AATAACGAT-AATAACGATDesign primers
2770943GTTCTCGATCTCTTTCTCGATCTCDesign primers
2799986CTCAAATTTGCCTCCCTCAAATTTGCTTCTTTCAGATTTGCTTCCDesign primers
2811234ATCATATGCAATCATTTACAATCATTTACADesign primers
2836523CTACCATACCGACGCCGACAATACTGACGCCGACAATACTGACGCDesign primers
2843124GTTATCATTGTCGTCGTCCCGGTTATCGTTATCGTCATCCCTGTCATCAAAGTCATCGTCCCGDesign primers
2928284ATTC-AATC-AATC-AATC-AATC-AATCDesign primers

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