Microsatellites /Tandem Repeats database

Genome: Alteromonas macleodii str. English Channel 673

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
149129AACCAAGAAAGTGCCCACAGCGACCATTATAGTGCCCACAGCGACCATTATAGTGCCCACAGCDesign primers
277851AGCGTTTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATTDesign primers
280148AGCGTTTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATTDesign primers
282445AGCGTTTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATT-TGCAGGTAACGATGTACAGATTDesign primers
379300GTAGGC-GTAGGC-GAAGGC-GTATGCDesign primers
559811GACGGTGGCGACGGTGGTGACGGCGGCDesign primers
566857TATAAATATCAATATAACTTTAAADesign primers
589590TCGCTGAGAAACAGTCGTTGAGAAACAATCGCTGAGTGACAGDesign primers
729279TCATCTTCATCGTCGTCTTCATCADesign primers
744741CAAAAGCTAGGAAAAAGGCTAGGAGAAAGGCTAGGADesign primers
752256CCA-ACA-ACA-CCA-ACT-ACA-CCT-ACA-ACA-CCA-ACA-ACADesign primers
828482AGGTTATTAAATAGCTTATTAAGTAACTTATTAAATAGCTTATCAAATDesign primers
968747TGGCGGTGGCGATACCGGAGGTGGTGATACAGGAGGTGGCGACACDesign primers
1022733CAAAATGCCAGTAGCGAAGCGAAAAATGCTAGTAGCGAAGCTCAAAGTGATAGCAGCGAAGCGDesign primers
1097243CGTAACCGTAATCGTTACCGTAGCDesign primers
1248573TCCACCACCACCGCCACCTCCGCCTCCACADesign primers
1454914AGCTCCGAAATAGCACCGAAATAGCACAGAAATDesign primers
1541330CGTTTTCGGTTTCGTTTGAGTTTTDesign primers
1661106AAAATAG-CGATAAG-CAAAAAG-CAAAAAG-CAAAAAG-CAAAAAG-CAAAAAG-CAAAAAG-CAAAAAGDesign primers
1716653CATGGTTATTTCCTTGTTATTTCCTTGTTATTTDesign primers
1868085AAAAGCAAAAGAATAAGCAAAAACDesign primers
1884116CGCTGAAGGCTCTTTACCCGCTGAAGGCTCTGCATCCGCTAAAGGCTCTTTACCDesign primers
1897655AAAAGAAATGAAATGGAATGTAAAGCAATGDesign primers
1987196GTGAAAAAAGCATTAGCGGTGACAAAAGGCTTAGCGGTGAAAAACGCATTGGTGDesign primers
2000878CCAACA-GCAACA-GCAACA-GCAACADesign primers
2250287TTTGATTTTGGTTTTGCTGTTGATDesign primers
2584233GCTAGCTCCGTA-GATAACTCCGTA-GATAACTCCGTA-GATAACTCCGTADesign primers
2636963TTTCGTTACAGCACTTTTCATTACACCGCTCTTCATTACAGCACTDesign primers
2687684TAATTTATTTTCATTTTATTTAAATDesign primers
2740549TGTTGTGTCGCCGCCGGTATCACC-ACCTGTGTCGCCGCCGGTATCACC-ACCTGTGTCGCCGCCGGTATCGCCDesign primers
2804871GCTTCAGGTTCAGCTTCAGGTTCADesign primers
2804958TCAAGC-TCAAGC-TCAGGC-TCAGGCDesign primers
2805165GCTTCA-GGTTCA-GGTTCA-GCTTCA-GTTTCA-GGTTCADesign primers
2805406GCTCTGACTCTGGCTCTGGCTCAGDesign primers
3085735TAAGCATCTTAAATAAGAAGCATCTTAAGTAAGAAGCACCTTAAGTAADesign primers
3085884TCCTTT-TTCTTT-TTCTTT-TTCTTTDesign primers
3228312GAAGGAAATAGCGCAGCGCAT-ATAGGTAATAGCACAGCGCAT-ATAGGTAATAGCACAGCGCAT-ATAGGTAATAGCACAGCGCATDesign primers
3523348GGCTTAGCTACTTAAC-TACTTAGCTACTTAAC-TACTTAGCTACTTAGCDesign primers
3523397ACTTTGCT-ACTTTGCT-ACTTTGCTDesign primers
3733267TTCGGCTTTTTCGGCTTCTTGGGCTTTDesign primers
3834127GGGTTT-TATTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTC-GGGTTCDesign primers
4251803GAACGA-GCATGA-GCATGA-GCATGA-GCATGA-GCATGADesign primers
4311429CTAACGAAC-ATGACGAGC-ATGACGAGC-ATGACGAGC-ATGACGAGC-ATGACGAGCDesign primers
4330654ACCGTACTTGCTACCGTGCTTTCTACCGTATTTCCTDesign primers
4415049CATGCCGCCCATTCCGCCCATGCCGCCDesign primers
4423892TTTTCTT-TCTTCGC-TATTCGC-TATTCGC-TATTCGC-TATTCGC-TATTCGC-TATTCGC-TATTCGCDesign primers
4445648CTGGGCCTTTGCTGGGTCTTTACTGGGTCATTGDesign primers

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