Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli B2904

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
111826ATGA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACADesign primers
167531CTGTATTATTATTTGTATTATTATATGTATTATTATDesign primers
222033AAATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATC-GCATCDesign primers
255982AATATTATCAAAATATTACCAAAATATTATCAADesign primers
279519TAGTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTADesign primers
353540TTAT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTTDesign primers
541587AACAA-GACAA-GACAA-GACAA-GACAA-GACAA-GACAA-GACAA-GACAA-GACAADesign primers
562639TTAGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGT-GTTGTDesign primers
745122ATATAATAAA-ATATAATAAA-TTATAATAAADesign primers
771782TTAAAAAT-TTAAAAAT-TTAAAAATDesign primers
876392ACAAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAATDesign primers
967663ATGAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAAC-ACAACDesign primers
1318107TAAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAADesign primers
1320997TCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGADesign primers
1322039ACCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAGDesign primers
1324670TTCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAGDesign primers
1327277AAGTC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATCDesign primers
1328713AAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGACDesign primers
1329982TCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGADesign primers
1332191AAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGACDesign primers
1344251TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
1376393ATTTTGC-TGTTTGC-TGTTTGC-TGTTTGC-TGTTTGC-TGTTTGC-TGTTTGC-TGTTTGC-TGTTTGCDesign primers
1735090AGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGCDesign primers
1928662TTTTTTTATATTTTTTTATGTTTTTTAATADesign primers
1956749GACTA-CACTA-CACTA-CACTA-CACTA-CACTA-CACTA-CACTA-CACTA-CACTADesign primers
1970312ATAA-ATAA-ATAA-ATAA-ATAA-ATAA-ATAA-ATAADesign primers
1971934ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
2007967TCAAAATGCAACATGCCTATGTC-GCAAAATGCAACATGCCTATGTC-GCAAAATGCAACATACCTATGTCDesign primers
2008037CAAAATGTAACATACCTATGTCG-CAAAATGTAACATACCTATGTCG-CAAAATGCAACATGCCTATGTCG-CAAAATGCAACATACCTATGTCG-CAAAATGTAACATACCTATGTCG-CAAAATGTAACATACCTATGTCGDesign primers
2031064AAATATAAGCAAATATAAGGAATTATAAGCDesign primers
2309994ACCGC-ACCGC-ACCGC-ACCGC-ACCGCDesign primers
2346999AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
2384388AGAAGAAAATAAAATAGAAGAAAACAAAATAGAAGAAAATAAAATDesign primers
2454951TTTTCTGAAAAATTTCTGAAAATTTTCTGAAAADesign primers
2504223ATTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTTDesign primers
2521666ATAATTAA-ATAATTAA-ATAATTAADesign primers
2649597ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers

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