Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli B2904

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
111829AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAAC-AAACDesign primers
222035ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGCDesign primers
279522TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGACDesign primers
353543TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGTDesign primers
541588ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAGDesign primers
562642GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTTDesign primers
771782TTAAAAAT-TTAAAAAT-TTAAAAATDesign primers
876394AATAT-AATAT-AATAT-AATAT-AATATDesign primers
967666ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACA-ACACADesign primers
1318109AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1320998CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGACDesign primers
1322041CAGAT-CAGAT-CAGAT-CAGAT-CAGAT-CAGAT-CAGAT-CAGAT-CAGAT-CAGATDesign primers
1324672CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGACDesign primers
1327280TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGA-TCAGADesign primers
1328714AGACC-AGACC-AGACC-AGACC-AGACC-AGACCDesign primers
1329983CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGACDesign primers
1332192AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACCDesign primers
1344251TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
1376395TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTGDesign primers
1735091GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCGDesign primers
1956750ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTACDesign primers
1970312ATAA-ATAA-ATAA-ATAA-ATAA-ATAA-ATAA-ATAADesign primers
1971934ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
2309994ACCGC-ACCGC-ACCGC-ACCGC-ACCGCDesign primers
2346999AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
2504224TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTGDesign primers
2521666ATAATTAA-ATAATTAA-ATAATTAADesign primers
2649597ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers

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