Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes SLCC2378

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
100294AAACAGCTAAAGAAACAGCAAATGAAACAACAAAAGDesign primers
168950AGTACCGCCAACACCAGTACCACCAACACCAATACCGCCTACTCCDesign primers
197500CGT-CAT-CAT-CAT-CGT-CAT-CAT-CATDesign primers
358516TTGCTTGTTTTG-TTGCTTGTTTTG-TTGCTGTTTTTGDesign primers
557796AGAAAAAGCAGATAAAGCAGAAAAAACDesign primers
596689AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
626505TTTGTATTAGTATTGGTATTTTTADesign primers
675955GACACCAAAAGATACACCAAAAAATACACCAAAAGADesign primers
702455TTCAGGAGC-CTCAGGAGC-CTCAGGAGCDesign primers
725315TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
957746AGAACAAAAACAACAACAAGAAAADesign primers
990035AAAAAGAAGAAGAAAACGAAACAGDesign primers
1113988TTTTTTTATTTTTTATCTTTTTTATDesign primers
1123832ATAAAAGAAATAAAACAAATACAAGAADesign primers
1127329TGCACATGTACATGTACATGCGCADesign primers
1150956ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1151085CCGGTAGACCCAGTAGACCCGGTAGACDesign primers
1298810CCCAACGCCAAATCCAACACCAGATCCGACGCCAAATCCAACACCAACACCAACACCAGATCCAACACCGGADesign primers
1385424TTTTTTTTATTTTTCTTTCTTTTGTDesign primers
1625220GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1850461CATCCGCATCGGCATCCGCATCGGCATCGGDesign primers
1850492GTCGGCATCAGCATCGGCATCGGCATCCGCATCAGCATCCGCATCAGCGTCGGCATCTGCGTCGGCATCAGADesign primers
1850917CGTCGGCATCGGCATCGGCGTCAGDesign primers
1850942ATCCGCATCAGCATCGGCATCGGCDesign primers
1850967TCAGCATCCGCATCGGCGTCGGCATCAGCATCGGCGTCAGCATCCGCATCGGCGTCGGCATCCGCATCAGCGDesign primers
1851040CGGCAT-CAGCAT-CCGCAT-CCGCAT-CAGCAT-CAGCATDesign primers
1851077AGCGTC-GGCATC-AGCGTC-AGCGTC-AGCATC-CGCATC-GGCGTC-GGCATC-AGCATC-GGCGTC-GGCGTC-AGCATCDesign primers
1851150GCATCG-GCGTCA-GCATCC-GCATCG-GCGTCA-GCATCA-GCATCA-GCATCA-GCATCADesign primers
1851228GCATCAGCGTCGGCATCGGCATCAGCATCCGCATCAGCATCCGCATCAGCATCAGCGTCCGCATCAGCATCADesign primers
1851301CGTCCGCATCAG-CGTCCGCATCAG-CATCAGCATCAG-CGTCCGCATCAG-CGTCGGCATCCGDesign primers
1851380GTCCGC-ATCAGC-ATCGGC-GTCAGC-GTCAGC-ATCGGC-GTCAGC-GTCAGC-ATCCGCDesign primers
1851435TCAGCA-TCAGCG-TCAGCG-TCCGCA-TCAGCA-TCAGCA-TCAGCG-TCCGCA-TCAGCG-TCGGCA-TCCGCA-TCAGCA-TCAGCA-TCAGCG-TCGGCA-TCAGCG-TCAGCA-TCCGCA-TCGGCA-TCCGCA-TCAGCA-TCCGCA-TCCGCA-TCAGCGDesign primers
1851585TCGGCGTCAGCATCCGCATCAGCATCGGCGTCAGCATCGGCGTCAGCGDesign primers
1851634CCGCAT-CAGCGT-CGGCAT-CGGCAT-CAGCAT-CAGCAT-CCGCAT-CCGCAT-CAGCAT-CCGCAT-CCGCAT-CAGCATDesign primers
1851707AGCGTCGGCATCAGCGTCAGCATCCGCATCGGCGTCAGCATCGGCATCGGCATCGGCGTCAGCATCGGCGTCAGCATCCGCATCAGCGTCDesign primers
1851819TCGGCATCCGCATCCGCATCGGCGTCAGCATCCGCADesign primers
1851858GCGTCGGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCGGCGTCGGCATCAGCGTCGGCATCAGCATCAGCGTCAGCATCGGCGTCAGCGTCGGCATCCCCAACADesign primers
1998020TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2083435TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2399927TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2407617CTTTTTCATCCTTTTTCCCCCTTTTTTATGDesign primers
2443765ATATTTTGTTGAATC-TAATTTTGTTGAATC-TAGTTTTGTTGAATCDesign primers
2467477CTCTTTTACTATTTTACTTTTTTADesign primers
2719244TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers
2745840CAACAACACCAATAACAAAAACAADesign primers

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