Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis HD-771

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
71397	CGGAAGAGCCAAAGA-AAGAAGAGCCAAAGA-AAGAAGAACCAAAGA	Design primers
179691	TGGTCCAGT-AGGTCCAGT-AGGTCCAGT	Design primers
557904	CAAGGAATACAAGGTATACAAGGAATT	Design primers
558892	AGGAATACAAGGCATACAAGGAATGCA	Design primers
559448	ACAGGGGCAACAGGGGCGACAGGAGCAACAGGAGCA	Design primers
580817	AAGCACAAGTACAAGCTCAAACAC	Design primers
731475	CATGAATATGAAAATGAACAGGAA	Design primers
744744	TATGTAAGGAATTTGTAAGGAATAGGTAAGAAA	Design primers
763346	TTTTTTATTTTTATTTTTATTTTTA	Design primers
767265	AGC-AGC-CGC-AGC-CGC-AGC-CGC-AGC	Design primers
775797	AGATTTAGATGTAAATTTAAATTT	Design primers
877695	TA-TT-TA-AA-AA-AA-TA-TA-AA-AA-AA-TA-TA-AA-AA	Design primers
927308	GATTTTTCAAC-ACTTTTTCAAC-ACTTTTTCAAC	Design primers
929428	AAAGAAGAAGAAAAAGCAAGAGAA	Design primers
929500	AAAGAAGAAGAAAAAGCAAGAGAA	Design primers
998833	GGATTCTGAGCCAATAAAAAAGGATTGTGAACCAAAAAAACAGGTTTCTGAGCCAATAAATCA	Design primers
1192246	TG-TT-TC-TA-TT-TC-TC-TT-TC-TT-TT-TC	Design primers
1288069	GTTAAAGATAAATTTAAAATTAAA	Design primers
1293981	TAGTACCAGTAGTATCAGTAGTACCAC	Design primers
1294031	CAACCGCCACAGCCGCCACAACCACCA	Design primers
1294135	GCCACAACCGCCACAACGACCACAACC	Design primers
1398622	GTTCGCAAATAGTCCGCAGATAGTTCACGAATA	Design primers
1407402	ATATTTGTAGTAATCTCTGTAGTAATATTTGTAGTA	Design primers
1451830	AATTAATCATAATTTATTATAATTAAGTAT	Design primers
1476253	AATTTAAAGATAAGGTAAAGATAAGATAAAGAT	Design primers
1559222	CCTGTTGCTCCTGTTGCT-CCTGTTAAACCTGTTGCT-CCTGTTAAACCTGTTGCT-CCTGTTGGGCCTGTTGCT-CCTGTTGGGCCTGTTGCT	Design primers
1559434	GCCTGTTGCTCCTGTTGGGCCTGTTGCTCCTGCTAAACCTGTGTCTCCTGTTGG	Design primers
1559569	TGGACCTGTTGGACCGGTTGGGCCTGT	Design primers
1561133	TCCGGTTGCTCCCGTTATTCCGATCGGTCCCGTTATTCCGGTCGATCCCGTTTTTCCGGTCGGTCCCGTTTTTCCGGTTGAACCTGTTAT	Design primers
1561276	TTCCGGTTGCTCCCGTTA-TTCCGATCGGTCCCGTTA-TTCCGGTCGATCCCGTTA-TTCCGGTCGGTCCCGTTA-TTCCGGTCGGTCCCGTTT-CTCCGGTTGCTCCCGTTA	Design primers
1561799	GGCTTACTGGGCCTACCGGGAGTACTGGACCTACCGGAAATACTGGGCCTACCG	Design primers
1596229	TACATTTTCATTTACTTTTGCATT	Design primers
1632725	TAATCCTAGTCCTAATGCTAATCC	Design primers
1652775	TTTTGTTTCTTTTCTTCTTCTTGTTTCTTTTGCTCTTCTAGTTTCTTTTGTTCT	Design primers
1652835	TTCTTAAGTTCCTCTTGTTTCTTTTGTTCTTCTTGTTTTTTCAGTTCTTCTTGT	Design primers
1717957	TAAAAGAAAAGAAAAGAAAATAAATTAACA	Design primers
1752072	AACTTCATTTAAGATTCATTTAAGATTCATTTA	Design primers
1786967	TATTTTTATAGATTTTCATACTTTTTTATA	Design primers
1959550	TTTTTCTTTTTTTCTTTCTTTTCTT	Design primers
1982261	AACGTTATTTGTAACGTTATTGTTATTGTTATTTGTAACGTTATTTAC	Design primers
1983008	CGTTTG-AGTTTG-AGTTTG-AGTTTG	Design primers
2017600	ATATATATAATATAAATATATAACTTATAAATATATATTATATAT	Design primers
2050332	TTTTTTATTTTGTTTTTCTTTTTTA	Design primers
2076319	AAAAATAAAACTAAGAATAAATATAAAAAA	Design primers
2104393	TGAATACCC-TGAATACCC-TGAACACCC	Design primers
2116403	TATTTTAATATATTTTTACATATATTAAAA	Design primers
2127324	CTCAAGGCA-TTCAAGGCA-TTCAAGGCA	Design primers
2127488	CAAGGCATTCAGGGCATTCAAGGCATT	Design primers
2127646	TGGACCTACTGGGCCTACTGGACCTACTGGACCTAC	Design primers
2129626	CCTACCGGGCCTACTGGGCCTACCGGT	Design primers
2129792	CTGGACCTATTGGACCTACTGGACCTC	Design primers
2129846	CTGGGCCTA-CTGGGCCTA-CCGGGCCTA	Design primers
2129948	CTGGGCCTACTGGACCTACTGGACCTA	Design primers
2131783	TGACCTTATGAACTTATCACCTTA	Design primers
2149979	CCTGGACCT-ACTGGACCT-ACTGGACCT	Design primers
2158016	AA-AT-AT-AA-AT-AC-AC-AT-AT-AA-AA-AT	Design primers
2168254	TCCTGTTGG-ACCTGTTGG-ACCTGTTGG	Design primers
2169224	ACCAGTTGGACCTGTTGGGCCAGTTGG	Design primers
2172764	AAATAAAAACAAAAATCAAAATAT	Design primers
2190257	AATGGTTC-TATGGTTC-TATGGTTC	Design primers
2282822	TTATAATTTATAACTTAAAATTTATAAT	Design primers
2296494	TAA-AAA-TAA-TAA-TAA-AAA-GAA-AAA	Design primers
2301317	AACCTACAAAATCATACAAAAACCTACAAG	Design primers
2361558	CCTGGTTTCTCACCTTCGCCTTCTGGTTTTCCGCCTTCGCCTTCTGGTTTTCCACCTTCGCCT	Design primers
2414501	TTTTTAAACAACTATATTATTTTTTAAATGACTTTATTGTAAATTAAACAACTTTATTAT	Design primers
2455678	TTCTGGTTCAGGTTTTGGCTCTGG	Design primers
2458472	TA-GA-AA-AA-TA-CA-AA-AA-TA-TA-AA-AA	Design primers
2467276	TACTACTTCTTGTTG-TTCTACTTCTTGTTG-TTTTACTTCTTTTTG-TTCTACTTCTTTTTG-TTCTACTTCTTTTTG	Design primers
2481759	CTTTTATTTCCTTCCATTTCTATTTATTTC	Design primers
2517496	AACTACACTAAACAATACTAAACTC	Design primers
2555024	GAAAAAAGCTGATGAAGAGGCTAAGAAAAAGGCCGATGAAGAAGCTAAGAAAAAAGCTGATGAGGAAGCCCA	Design primers
2555249	AAAAGCTGAAGACGAAGCTAAGAA-AAAAGCTGAAGACGAAGCTAAGAA-GAAAGCTGAAGAAGAGGCCAAGAA-AAAAGCTGAAGACGAAGCTAAGAA-GAAAGCTGAAGAAGAGGCCAAGAA-AAAAGCTGAAGACGAAGCTAAGAA	Design primers
2594689	ACTATACTTTTCTGTACTTTCATATACTTT	Design primers
2604502	TTTTTTTATTTTTATTTTATTTTTC	Design primers
2606262	AAATACTTAAATATTTAAATATTT	Design primers
2614428	ATAAAAAAAAAGAAAGTAAATTAAA	Design primers
2780201	TCAAAAGCCTGCTGAGCAAAAACCTGCCGAGCAAAAGCCTGCTGA	Design primers
2780293	CTCAAAAACCTGCTGAACAAAAACCTGCTGAGCAAAAGCCTGCTG	Design primers
2795872	TTTCTTTTGCTCTTCTACTTTCTTTTGCTCTTCTATTTTCTTCTGTTCCTCTACTTTCTTCTGTTCTTCTGCTTTCTTCTGTTCTTCTACTTTCTTTTGTTCTTCTGCTTTCTTTTGTTCTTCCGCTTTCTTCTGTTCTTCTACTTTCTTTTGTTCTTCTGCTTTCTTCTGTTCTTCTAC	Design primers
2796053	TTCTTCTGTTCTTCCGCTTTCTTCTGTTCTTCTACTTTCTTTTGTTCTTCTGCTTTCTTTTGTCCTTCCGCT	Design primers
2857586	TGGTTCTTT-CTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG	Design primers
2865799	ACTGGGCCTACCGGGCCTACTGGACCT	Design primers
2865827	CCGGACCTACCGGGCCTACTGTACCTACGGGGCCTACCGGACCTACTGGACCTACCGGGCCTACTGGACCTA	Design primers
2865982	ACTGGGGCTACCGGACCTACGGGAGCTACTGGACCTACGGGGGCTACTGGACCG	Design primers
2917631	AAATATATCAACGGTTTTTTGGATATATCAACGATTTTTCAAATATATCGATTGTTTCTT	Design primers
2947862	TAAAAGGCACCTTAGAAGGCACCTTAGAAGGCGCCT	Design primers
2952097	TATTTTTTTATTTATTTATTTTCT	Design primers
3029444	GCACAAGCAGAAGGACAAGCACAG	Design primers
3034907	TTTCCGGTTTTTCTGGACCCGGTGTTCCAGGCTTTTCTGGACCTGGTGTTCCAGGTTTTTCTGGATTCGGTG	Design primers
3034980	TCCAGGTTTCTCTGGATCTGGTGTTCCAGGTTTTTCTGGATTCGGTGTTCCAGGTTTCTCTGGATCTGGTGTTCCAGGCTTTTCTGGATCTGGTGT	Design primers
3093559	CAATCAGAAGAATTACAAACGCAAGCTGAAGAACTACAAATGCAAGCCGAAGAATTACGAACA	Design primers
3105242	TGTATATCTAAATGTATAACCAAATGTATAACCAAA	Design primers
3131272	GAGTCATTGTTTTTTCTTTAAGAGTCGCTGGTTTTTCTTTAAGCGTCACTGATTTTTCTTCAA	Design primers
3135306	TTC-TTC-TTT-TTC-TTT-TTC-TTT-TTC	Design primers
3141742	GTTCTTGTTTAGTGTTTTCCTGTTTAGTATTTTCTTGTTTAGGTT	Design primers
3207337	ATTTTTTCCTTTTTTCATATTTTC	Design primers
3237032	TTTCTTTTTGTTCTTCTTTTTCGT	Design primers
3266102	GGTTTTTCTACTCCCTCACCTGGTTTTTCTGTTCCTTCACCTGGCTTTTCTGTTCCTTCACCTGGTTTTTCTGTTCCTTCACCC	Design primers
3266187	GCTTTTCTGTTCCTTCACCCGGCTTTTCTGTTCCTTCACCTGGTTTTTCTGTTCCTTCACCTG	Design primers
3338049	GCTGAAGCTCAAGCAGAAGCTAAAGCTCAA	Design primers
3338099	AGCAGCTAAAGCTCAAGCAGATGCTGAAGCTCAAGCAGCGGCTAAAGCTCAAGA	Design primers
3338217	GCTCAAGAAGCAGCTAAAGCTCGTGAAGCGGCTAAAGCTCAAAAACCAGCTACA	Design primers
3442522	GGTTCAGCTGGTTTAGCTGGTTTAGCT	Design primers
3591170	TTTGTTGGTTCTTTCACTTCTTCTTTTGTTTCTTCCACTTCTTTTGTTGGTTCTTTCACTTCT	Design primers
3598429	TCCTTT-TCCTTT-TTCTTT-TGCTTT	Design primers
3694043	TGGTTCTGGTGACAACGGTTCTGGCGGCAATGGTTCTGGTGGCAGTGGCTCTGGCGACAA	Design primers
3694152	TCTGGCGGCAATGGTTCCGGCGGTAACGGTTCTGGTGGCAGTGGCTCTGGTGGCAATGGT	Design primers
3694240	GCTCTGGTGACAACGGTTCTGGTGGCAACGGCTCTGGTGGCAGTGGCTCTGGCGACAACG	Design primers
3694301	TTCCGGCGGTAACGGCTCTGGTGGTAACGGTTCTGGCGGCAATGGTTCCGGCGGTAACGG	Design primers
3694375	GCTCTGGTGACAACGGCTCTGGTGGCAGTGGCTCTGGCGACAACGGTTCTGGTGGCAATGGTTCTGGCGGCAACGGCTCTGGTGGCAACGGCTCTGGTGGCAATGGCTCTGGTGGCAATGGCTCTGGTGGCAATGGCTCTGGTGGCAATGGCTCTGGTGGCAATGGCTCTGGTGGCAATG	Design primers
3705931	TAATATGAAGTTGATATGAAGTTAATTTGAATT	Design primers
3904547	TTTTCTTTACTTTTATTTTTTTATC	Design primers
3938426	TTATAACTAGTTATATTTAGTTATAATTAG	Design primers
3973523	TTTTCCTGTTCCGTTTCCTTTTCT	Design primers
4158633	TATAATGTATATATTGTATATAATGTT	Design primers
4160786	ACCAGCACCTAC-TGCAGCACCTAC-TGCAGCACCTAC	Design primers
4193694	TTTTTTTGTTATTTTGTTTTTTTCTTTTTA	Design primers
4260653	AAAAAAAGAAAAAACGAAGAAAAG	Design primers
4342104	AGA-AGG-AAC-AGA-AGA-AGT-AAC-GGA-AGA-AGA-AAA-AGA	Design primers
4342230	AAAAGCGAAAGCAAAGGCAAAGGC	Design primers
4342332	AAAAGCGAAAGCAAAGGCAAAGGC	Design primers
4342434	AAAAGCGAAAGCAAAGGCAAAGGC	Design primers
4375875	GAAGAAAGAAGAGAAAAAGGAAGAGAAAAAAGAAGAGAAAAAACAAGA	Design primers
4451294	GCAGAAGAAGAAGCACAAGCAAAA	Design primers
4451430	AAGCTCAAAAAGAAG-AGCCTAAAAAAGAAG-AACCTAAAAAAGAAG-AACCAAAAAAAGAAG	Design primers
4651030	TATAGGTTTTTAAATGTTTTTATAGTATTT	Design primers
4682962	AACCCACCGGTGGAAATCCCTCCGGTGGGAAATCCTCCGGTGGAA	Design primers
4683016	CTACTAAATACTAATATACTAAGTACTAATAAATTAAATACTAATATACAAAATACTAAT	Design primers
4751315	AA-AG-GA-TA-CA-GA-GA-AA-GA-TA-CA-GA-GA-AG-GA-TA-CA-GA-GA-AA-GA-TA-CA-GA-GA-AA-GA-TA-CA-GA	Design primers
4844639	GCAGCGCTGCGCAGCGCTGCGCAGC	Design primers
4852412	TGTTGAATGCCT-TTTTCAATGCCT-TTTTCAATGCCT-TTTTCAATGCCT	Design primers
4907264	AA-AA-AA-GA-TA-AA-AA-GA-TA-AA-AA-GA	Design primers
4934095	CTCACCAAG-GCCATCAAG-GCCATCAAG-GCCATCAAG-GCCATCAAG-GCCATCAAG	Design primers
4934154	CACGGCCACCAAGGCCACCAAGGCCAC	Design primers
4934182	AAGGTCACC-AAGGTCACC-AAGGTCACC-AAGGTCACC-AAGGTCACC-ACGGTCACC-AAGGTCACC-AAGGTCACC-ACGGTCACC-AAGGTCACC	Design primers
4934321	TCAACAGCA-CCAACAGCA-CCAACAGCA	Design primers
4944544	GGGATTCAAGGAATTCAAGGGATCCAA	Design primers
4944742	GGAGCTACAGGAGCAACAGGAGCGACA	Design primers
4944910	GGAGCAACCGGAGCAACAGGAGCGACC	Design primers
5115990	AAAAAACCAGAAGTAGAAAAACCGGAAGCAGAAAAACCAGATGAA	Design primers
5116425	GATAACCAAGGTGGAAACGACAATCAAGGCGGAAACAACAACCAAGGTGGAAATAACAACCAAGGCGGAAACAACAACCAAGGTGGAAACAACAACCAAGGTGGAAAC	Design primers
5116534	ACAATCAAGGCGGAAATAACAACCAAGGCGGAAACGACAATCAAGGTGGAAACA	Design primers
5116992	GGGAACCAAGGTGGAAAC-GACAACCAAGGCGGAAAC-GACAACCAAGGCGGAAAC-GACAACCAAGGCGGAAAC-GACAACCAAGGTGGAAAC-GACAACCAAGGTGGAAAC-AACAACCAAGGTGGAAAC-AACAACCAAGGTGGAAAC	Design primers
5403916	GATATTGTTGCTGGTATTGCTGCTGATATTGCTGTTGATATTGCTGCG	Design primers
5526269	AA-AA-AA-AA-AG-AA-AT-AA-AA-AA-GA-AA-A	Design primers
5543126	CTGTAG-CTGTAG-CAGTAG-CTGAAG	Design primers
5658046	AAAAAATTCAATAAATATTCAAAAAATGTTCAA	Design primers
5780475	CGTGAACTATTCGCGGACTATTTGCGAACTATT	Design primers
5790317	ACCAAACTTCCAAACTACAAAACT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

71397

CGGAAGAGCCAAAGA-AAGAAGAGCCAAAGA-AAGAAGAACCAAAGA