Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis HD-771

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
71399GAAGAGCCAAAGAAA-GAAGAGCCAAAGAAA-GAAGAACCAAAGAAADesign primers
179692GGTCCAGTA-GGTCCAGTA-GGTCCAGTADesign primers
763347TTTTTA-TTTTTA-TTTTTA-TTTTTADesign primers
927309ATTTTTCAACA-CTTTTTCAACA-CTTTTTCAACADesign primers
1476256TTAAAGATAAGGTAAAGATAAGATAAAGATAAGDesign primers
1559266ACCTGTTGCTCCTGTTGG-GCCTGTTGCTCCTGTTGG-GCCTGTTGCTCCTGTTGGDesign primers
1561300TCGGTCCCGTTATTCCGGTCGATCCCGTTATTCCGGTCGGTCCCGTTATTCCGGDesign primers
1561839TACTGGGCCTACCGGAAGTACTGGACCTACCGGAAGTACTGGGCCTACCGGAAGDesign primers
2127325TCAAGGCAT-TCAAGGCAT-TCAAGGCATDesign primers
2127659CCTACTGGA-CCTACTGGA-CCTACTGGADesign primers
2168255CCTGTTGGA-CCTGTTGGA-CCTGTTGGADesign primers
2190258ATGGTTCT-ATGGTTCT-ATGGTTCTDesign primers
2361567TCACCTTCGCCTTCTGGTTTTCCGCCTTCGCCTTCTGGTTTTCCACCTTCGCCTTCTGGTTTTDesign primers
2467279TAC-TTC-TTG-TTG-TTC-TAC-TTC-TTG-TTG-TTT-TAC-TTC-TTT-TTG-TTC-TAC-TTC-TTT-TTG-TTCDesign primers
2555262GAAGCTAAGAAAAAAGCTGAAGACGAAGCTAAGAAGAAAGCTGAAGAAGAGGCCAAGAAAAAAGCTGAAGACGAAGCTAAGAAGAAAGCTGAAGAAGAGGCCAAGAAAAAAGCTGAAGACDesign primers
2780295CAAAAACCTGCTGAACAAAAACCTGCTGAGCAAAAGCCTGCTGAADesign primers
2795921TCTACTTTCTTCTGTTCTTCTGCTTTCTTCTGTTCTTCTACTTTCTTTTGTTCTDesign primers
2796023TGTTCTTCTGCTTTCTTCTGTTCTTCTACTTTCTTCTGTTCTTCCGCTTTCTTCDesign primers
2857595CTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTG-TTGTTCTTGDesign primers
3034912GGTTTTTCTGGACCCGGTGTTCCAGGCTTTTCTGGACCTGGTGTTCCAGGTTTTTCTGGATTCGGTGTTCCADesign primers
3135309TTCTTT-TTCTTT-TTCTTT-TTCTTTDesign primers
3266113TCCCTCACCTGGTTTTTCTGTTCCTTCACCTGGCTTTTCTGTTCCTTCACCTGGTTTTTCTGTDesign primers
3266177CCTTCACCCGGCTTTTCTGTT-CCTTCACCCGGCTTTTCTGTT-CCTTCACCTGGTTTTTCTGTTDesign primers
3442527AGCTGGTTT-AGCTGGTTT-AGCTGGTTTDesign primers
3694443GGCAACGGCTCTGGT-GGCAACGGCTCTGGT-GGCAATGGCTCTGGT-GGCAATGGCTCTGGT-GGCAATGGCTCTGGT-GGCAATGGCTCTGGT-GGCAATGGCTCTGGTDesign primers
3938433TAGTTATATTTAGTTATAATTAGTTATATCDesign primers
4160787CCAGCACCTACT-GCAGCACCTACT-GCAGCACCTACTDesign primers
4375879AAAGAAGAGAAAAAGGAAGAGAAAAAAGAAGAGAAADesign primers
4451450AAAAAAGAAGAACCTAAAAAAGAAGAACCAAAAAAAGAAGAGCCTDesign primers
4751316AA-GG-AT-AC-AG-AG-AA-AG-AT-AC-AG-AG-AA-GG-AT-AC-AG-AG-AA-AG-AT-AC-AG-AG-AA-AG-AT-AC-AG-AGDesign primers
4852414TTGAATGCCTTT-TTCAATGCCTTT-TTCAATGCCTTT-TTCAATGCCTTTDesign primers
4907265AAAAAGAT-AAAAAGAT-AAAAAGATDesign primers
4934097CACCAAGGC-CATCAAGGC-CATCAAGGC-CATCAAGGC-CATCAAGGC-CATCAAGGCDesign primers
4934157GGCCACCAA-GGCCACCAA-GGCCACCAADesign primers
4934185GTCACCAAG-GTCACCAAG-GTCACCAAG-GTCACCAAGDesign primers
4934322CAACAGCAC-CAACAGCAC-CAACAGCACDesign primers
5116479AACAACCAAGGCGGAAACAACAACCAAGGTGGAAACAACAACCAAGGTGGAAACDesign primers
5116995AACCAAGGTGGAAACGACAACCAAGGCGGAAACGACAACCAAGGCGGAAACGACAACCAAGGCGGAAACGACAACCAAGGTGGAAACGACAACCAAGGTGGAAACAACAACCAAGGTGGAAACAACAACCAAGGTGGAAACAACDesign primers

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