Microsatellites /Tandem Repeats database

Genome: Marinobacter sp. BSs20148

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
166568AGGCCAAGGGCGAAGGAGAAGCAGAAGGCAAGGCCGAAGGAGAAGGAGAAGGCAAGGCCGAAGGAGAAGGAGDesign primers
219380GGTGGTGGTGCTGGCGGTGGCGGTGGTGTTDesign primers
241566TTCTGGTCCTGGCTCTGGCTCTGGDesign primers
241642CGCTGTCGATGTCGCTGCTGCTGTDesign primers
470938CCACCACCGCTACCACCGCTACCACCGCCGCCACCGDesign primers
471599TAATCG-CAACTG-CAACTG-CAACTG-CAACTG-CAACTG-CAACTG-CAACTG-CAACTGDesign primers
496258GAGTCAGAATCAGGGTCAGGGTCADesign primers
618828CCTGAAAACCCTGAGAACCCTGAGAACDesign primers
675793GAAAGTGCTGGTGAGAGTGCTGGTGAGAGTGCCGGTDesign primers
738967ACCACCAGAAAAAAGAGCACCACCAAAACTAAGAGCACCACCAAAACTAAGAGCDesign primers
788969CCTGAAAACCCTGAGAACCCTGAGAACDesign primers
834265CTCTGAGCCTTTGAGCCTCTGAGCDesign primers
902341TCAGAGTTGCCT-TAAAAGTTGCCT-TAAAAGTTGCCT-TAAAAGTTGCCTDesign primers
921521AGCGACGAG-TGCGACGAG-TGCGACGAGDesign primers
936099CACTCTCCACATGCTCTCCACACGCTCTTCACADesign primers
943106TTATACGA-TAATACGA-TAATACGA-TAATACGADesign primers
967236ACAACAACGACAACAATAACAACGACAACGACAATADesign primers
993474GAGGGTGAGAGTGTGGGTGAGAGTDesign primers
1029113ACCGCGCCC-ACCACGCCC-ACCACGCCC-ACCACGCCCDesign primers
1051874AGGCCGCAACAGGCAGCACCGAGCCGCAACDesign primers
1058422TGCCGC-AGACGC-AGACGC-AGACGC-AGACGC-AGACGCDesign primers
1069062ATTACTTTCAAGCTACTTTCAAACTACTTTTAAGCTACTTTCAADesign primers
1125446AAACGTATGTTTA-AAACGTATGTTTA-AAACATACGTTTADesign primers
1126803CTTTGA-TTTTGA-TTTTGA-TTTTGA-TTTTGA-ATTTGADesign primers
1230102ATTGAATAACCGATTGAATAGTCGATTGACTGACCGDesign primers
1260142TATTAACAAGT-GCTTAACAAGT-GCTTAACAAGTDesign primers
1335951TTGGACG-ATGGACG-ATGGACG-ATGGACGDesign primers
1365787ATAAGGC-TTAAGGC-TTAAGGC-TTAAGGCDesign primers
1365820GGTAAA-GGAATA-GGAATA-GGAATA-GGAATA-GGAATADesign primers
1420266CTTTTCAACT-CCTTCCAACT-CCTTCCAGCT-CCTCCCAACT-CCTCCCAACT-CCTCCCAACTDesign primers
1500981CCTGAAAACCCTGAGAACCCTGAGAACDesign primers
1558603CTACAAATCC-TGACAAATCC-TGACAAATCCDesign primers
1637772TCTATGTACTA-TCTATGTACTA-TCTACGCACTADesign primers
1725019CGCGATCCTGAGCGGCGCGGACCTGAGTGGCGCGAACCTGAGCGGDesign primers
1775246CTTGCTA-GTTGCTA-GTTGCTA-GTTGCTADesign primers
1837554TAGTACCGACTTTCATAGTACTGACTTTCATAGTACTGACGTTGADesign primers
1914544GGGTGA-AGGTGA-GGGTGA-GGGTGADesign primers
2002366TCACGGTGCTCGCGGTGCTCGCGGTGCDesign primers
2153084CCGGGG-CCGGAG-CCGGAG-CCGGAGDesign primers
2186433CACCATCGCCATCACCACCAGCATDesign primers
2189617ACCTGAATAGTCACTATCTGAATAGTCACTATATAAATAGTCACTACCTGGATAGTAACTDesign primers
2248559TCCTCTTCTAAAAGATCCTCTTCCAACAAATCCACTTCTGGAAGADesign primers
2287649TCTAACTCTAACTCTGGCTCTAACTCTAACTCTGGCDesign primers
2452558TTCGCCCCTTACTTCGCCCTTTACTTCACCCCGTACDesign primers
2457686CTCCGTACAACTTTAGCTCTGTACGATTTTAGCTCTGTACAACGTTAGDesign primers
2462957TTGAAG-TCGGAG-TCGGAG-TCGGAG-TCGGAG-TCGGAGDesign primers
2533359AAAACC-AACACC-GAAACC-GAAACC-GAAACCDesign primers
2594531GTTGATAGTGCTGTTGATAGCGCCGTAAATAGTGCTDesign primers
2616725CAAAGCAGCAGCGGCCAGAACAGCAGCGCCCAGAACAGCAGCGCCDesign primers
2704755TTTCCTGCATTTTTCCCTGCATTCTTTCCTGCGTCTDesign primers
2720050TCTTGTGACGTTTTTTGCGACGTTTGTTGTGACGTTDesign primers
2721634TTAAGAGTTACTTAAGAGTTTTTCAAGGGTTACDesign primers
2722832TAGTGCAAACAGAGAGTGCAAACAAAGAGTGCAAACGGADesign primers
2745014TGACTGG-TTACTGG-TTACTGG-TTACTGG-TTACTGGDesign primers
2781504ATTTTTAGCGAAGTTTTTGGCGAAATTGTTAGCGAADesign primers
2818681TTCAGATGCCTACTTATCAGATGCCTGTTTATCAGGTGCCTATTTDesign primers
2938101CAGGCGCCATCACCGGCACCATCACCGGCGCCATAADesign primers
2949880TTTAAAAAGAGATTTAGAAAAAGAGTTAAAAAGCGATTTAAAGAGTGADesign primers
2969729GAATTGAT-GCCCTGAT-GCCCTGAT-GCCCTGAT-GCCCTGAT-GCCCTGATDesign primers
2981066TTATGGGCGTTATTGGCGTTATGGGTGDesign primers
3017610GATACTGCTCAAGATACTATTCAAGATACTACTCAADesign primers
3070893AGAGGA-TGGGGA-TGGGGA-TGGGGA-TGGGGA-TGGGGADesign primers
3070930CGGGAT-GGGGAT-GGGGAT-GGGGATDesign primers
3093434TTACTGTAG-TTACTTTAG-TTACTTGAG-TTACTGTAG-TTACTGTAG-TTACTGTAG-TTACTGTAG-TTACTGTAGDesign primers
3106001CAGCCGGTATAGCCGGTACCGCCGGTADesign primers
3108001GGCCGGGTTGGCCGGATTGGCCGGATTDesign primers
3126381CTTTTTTCTGCTTTTCTTTGTTCTTTTCTGDesign primers
3148686GAAACAGG-TTGACAGG-TTGACAGG-TTGACAGG-TTGACAGG-TTGACAGGDesign primers
3149407CCGATAA-GCGATAA-GCGATAA-GCGATAADesign primers
3343218CCATCGACATAGGTGCTATCGACATAGGCGCTATCGACATAAGGGDesign primers
3372612GGTTGAGCGCTAGCTCAACATGCTAAATGGAACGCTAGCTCAACATGTTAGACGGAGCGCTAGCTCAAGATGTTADesign primers
3380332TCAGAAGG-TCAGGCGT-TCAGGCGT-TCAGGCGT-TCAGGCGT-TCAGGCGTDesign primers
3474752GTC-GTC-GGC-GTC-GTC-GCC-GTC-GTCDesign primers
3482019TTATGCACTGATGCACTGATGCACDesign primers
3549969CGTTCAGTTCGCTCAGTTCGTTCAGGTDesign primers
3633809CACGATCACGACCACCATCACGATDesign primers
3668156GAGCACTTTTTATCAGAGCGCCGTTTATCAGAGCACAGTTTATCADesign primers
3670716CGGCGGCGGCGACGACGGCGGCGCDesign primers
3845703ATACCA-ACACCA-ACACCA-ATACCA-ATACCADesign primers
3848018CAGGTGCAT-CAGGTGCAT-CAGCTGCATDesign primers
3852836ACCATC-ACCATC-ACAATC-ACCGTCDesign primers
3867715TGGCCCTGGCTCCGGCCCTGGCTCDesign primers
3911967CTTTCGGGGTAACCGGCTTCGGAGTAACCGGCTTCGGAGTAACCGDesign primers
3953172TGACTGGTCT-AGTCTGGTCT-AGTCTGGTCT-GGTCTGGTCTDesign primers
3990056CACGGGCTCGGGCATGGGTACGGGDesign primers
4030597GATTAGGATGAAACTTTATTTATAACGATGATACTTTATTCGTACGGATGAAACTTTATTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.