Microsatellites /Tandem Repeats database

Genome: Amycolatopsis mediterranei S699

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
333687GCCCCC-GCCCCC-GCCCCC-GCCCCC-GCCCCC-GCCCCCDesign primers
774883GGACCG-GGACCG-GGACCG-GGACCG-GGACCGDesign primers
868796TGACCGCCATGCGCCG-TGACCGCCATGCGCCG-TGACCGCCATGCGCCGDesign primers
1136373CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCC-CCGCCAGCGCAGTCCDesign primers
1290875CCCGGC-CCCGGC-CCCGGC-CCCGGCDesign primers
1868486GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTG-GGGCGGGCTGTGGTGDesign primers
1944959CCGACA-CCGACA-CCGACA-CCGACADesign primers
2390490TCGGGCGTC-TCGGGCGTC-TCGGGCGTCDesign primers
2460861GCGGGCCCGG-GCGGGCCCGG-GCGGGCCCGG-GCGGGCCCGGDesign primers
2718214CAGGACAAGGCCAAT-CAGGACAAGGCCAAT-CAGGACAAGGCCAATDesign primers
2767822GGGCTCTGCTGCG-GGGCTCTGCTGCG-GGGCTCTGCTGCG-GGGCTCTGCTGCGDesign primers
3058494ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACG-ACTCGCGTGCCTGGACGGACGDesign primers
3226132CGTCACGACACCGAG-CGTCACGACACCGAG-CGTCACGACACCGAGDesign primers
3337982CAGCGCCGATCCGGG-CAGCGCCGATCCGGG-CAGCGCCGATCCGGGDesign primers
3519280GGCCAGGCG-GGCCAGGCG-GGCCAGGCGDesign primers
3634345CGGGACCGC-CGGGACCGC-CGGGACCGCDesign primers
3920476GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGAC-GCTGAGCAAGGACDesign primers
4546653ACTCGCGTACCTGGACGGACG-ACTCGCGTACCTGGACGGACG-ACTCGCGTACCTGGACGGACG-ACTCGCGTACCTGGACGGACGDesign primers
4689530GTGGGCTGA-GTGGGCTGA-GTGGGCTGADesign primers
4790429GCCGCCGAG-GCCGCCGAG-GCCGCCGAG-GCCGCCGAGDesign primers
4796782ACGACGGCGCGGTTGTGG-ACGACGGCGCGGTTGTGG-ACGACGGCGCGGTTGTGG-ACGACGGCGCGGTTGTGGDesign primers
5058122CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGG-CGGGGTTGCGGAGAGCGGCAAGGDesign primers
5557313GCAGC-GCAGC-GCAGC-GCAGC-GCAGCDesign primers
5557540CAGGC-CAGGC-CAGGC-CAGGC-CAGGCDesign primers
5562583TCCAGACACGCGTGTCGTCCG-TCCAGACACGCGTGTCGTCCG-TCCAGACACGCGTGTCGTCCGDesign primers
5710216GGGCGG-GGGCGG-GGGCGG-GGGCGGDesign primers
6014202CGTCGAGGC-CGTCGAGGC-CGTCGAGGCDesign primers
6108963GCTGGG-GCTGGG-GCTGGG-GCTGGG-GCTGGGDesign primers
6549061CGGGCCGCC-CGGGCCGCC-CGGGCCGCCDesign primers
6790677TCCGGTCAGA-TCCGGTCAGA-TCCGGTCAGA-TCCGGTCAGADesign primers
6818898GGTAACTGC-GGTAACTGC-GGTAACTGCDesign primers
6863249TCGCGG-TCGCGG-TCGCGG-TCGCGGDesign primers
7726146GCGTGTCGTCCGTCCAGGTAC-GCGTGTCGTCCGTCCAGGTAC-GCGTGTCGTCCGTCCAGGTACDesign primers
7761120CCGGGGG-CCGGGGG-CCGGGGG-CCGGGGG-CCGGGGG-CCGGGGG-CCGGGGGDesign primers
8290030TCGGC-TCGGC-TCGGC-TCGGC-TCGGC-TCGGC-TCGGC-TCGGCDesign primers
8290098GCTCGGCCCG-GCTCGGCCCG-GCTCGGCCCGDesign primers
8290129CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGGDesign primers
8304486GACGTC-GACGTC-GACGTC-GACGTC-GACGTCDesign primers
8346825GCTGGTCGTACTGCT-GCTGGTCGTACTGCT-GCTGGTCGTACTGCTDesign primers
8651039GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGGDesign primers
9047194CCTGAAGA-CCTGAAGA-CCTGAAGADesign primers
9448259GCCGGACTTCTCGGG-GCCGGACTTCTCGGG-GCCGGACTTCTCGGG-GCCGGACTTCTCGGGDesign primers
9471960CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGA-CACGCGAGCCGACCCTCCAGADesign primers
9594876CGCCGTTCGGCTGCC-CGCCGTTCGGCTGCC-CGCCGTTCGGCTGCCDesign primers
9777140CGTGTCGTCCCTTCAATCACG-CGTGTCGTCCCTTCAATCACG-CGTGTCGTCCCTTCAATCACGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.