Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Belliella baltica DSM 15883

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
84150	GTACCAA-GTACAAA-GTACAAA-GTACCAA	Design primers
122376	ACA-ACC-ACC-ACC-ACC-ACC-ACC-ACC	Design primers
165422	TGGTGGTGGTAGTGTTGGCGGTGG	Design primers
171167	TTGTTAATCGTTAAGTGTTAATTGTTAA	Design primers
194351	AAATGGGTTAAAAGGTTAAATTGGTTAAAAGGTTAACTGGATTAAGAGGTTAATTGGGTTAATAGGTT	Design primers
420335	GTTGGAAAGTTGAAAAGTTGGAAA	Design primers
434408	GTGAGATGTGAGAAATGAGATTTGAGAT	Design primers
478631	AGATTAAGAGATTACGAGATTATG	Design primers
504676	TGACCTCCACGACCTCCATCACCTCCA	Design primers
588007	GACCTTGACCTGGTC-TTCCTTGACCTGGTC-TTCCTTGTCCTGGTC	Design primers
642779	AACTTTCCAACCTTACAATTTTCCAATCTTACAATCTTCCAATCTTAC	Design primers
642906	TAACCTTCCAACCTTATAATTTTCCAATCTTATAATTTTCCAATCTTA	Design primers
643017	AACTTTCCAACCTTCCAACTTTGC	Design primers
691265	GAAAAGACAAAAAAAGAACAAAAAA	Design primers
743200	TTAAAATTGTAAAATTTTAAGATT	Design primers
751683	TTTTTTTATTTTTATATTTTTTGTT	Design primers
758321	TGTACAATGTATAATGTACCATGTACCA	Design primers
765786	GAAATAAGGTAGATATAAGGTTGAAATATGATAGAAATAAATTA	Design primers
807162	TAATCTGATCTAATAAAATCTCATC	Design primers
828454	CTTGGTACTTCGTACTTGGTACTTGGTA	Design primers
829086	CTTGGTACTTCGTACTTGGTACATGGTA	Design primers
975679	AAATCTGCGAAATCCGCGTAATCTGCG	Design primers
1284377	ATTTCAAATTATTTCTATTTATTTCAAGTC	Design primers
1429097	AGTACAAAGTACCAAGTACGATGTACAA	Design primers
1442517	CTTTTTTTGACATTTTTTAACGTTTTTTGA	Design primers
1469248	TTAATTTTAAGTTTAACTTTAATT	Design primers
1469692	GTGCTATCATTACTCATCATAGTACTATCATTTTCCATCATAGTACTGTCATTGCTCATCATA	Design primers
1473660	CAACTTCTACTTCACCTTCAACTA	Design primers
1482759	TTTTTTCATATTTTTTCTTGTTTTTGAATA	Design primers
1489910	CAACTTTTCAATTTTTCAACTTAT	Design primers
1492419	AGCCACCA-AGCCACCA-AGCCACAA	Design primers
1545528	AAGAAACAAGAAATTAGAAACAAGAAACAAGAAGC	Design primers
1569741	GTACAAAGTACCAAGTACAACGTACAAA	Design primers
1647201	TTCCAACCTTCCAATCTTCCAACT	Design primers
1735583	TTTG-CTTC-TTTC-TTTC-TTTC-TTTC-TTTC-TTTC-TTTC	Design primers
1744156	CTTC-TTTC-TTTC-TTTC-TTTC-TTTC	Design primers
1745824	TATTGTTTTTATTTGTTTTTTATTTTGTTT	Design primers
1749076	GAAAAAGTGGTGAAAAGTGGGAAGAAGTGG	Design primers
1793864	ATATAAAAAGAAACAAAAAGAAATAAATAG	Design primers
1804547	ATTTATTTTAATTGAATTAAAATTA	Design primers
1807010	TGG-TGC-TGC-TGG-TGA-TGC-TGG-TGC-TGC	Design primers
1861572	ATCTAAAATCTACAATCTAAGATCTAAA	Design primers
1863570	CTTTAAA-ATCTAAA-ATCTAAA-ATCTAAA-ATCTAAA-ATCTAAA	Design primers
1928508	GTGATGGAGTGACGGAGTGATGAA	Design primers
1930005	CAAGATATAAGATACAAGACACAAGATT	Design primers
1942062	GTGATGGAGTGACGGAGTGATGAA	Design primers
1964146	TCTTGATTCTTGGTTCTTAATTCTTGAT	Design primers
1981663	GTAT-CTAT-CTAT-CTAT-CTAT-CTAT	Design primers
2019905	GTATTAACTCCGTATTAAGTCCGTATCAACGCC	Design primers
2036135	GTGATGGAGTGACGGAGTGATGAA	Design primers
2066547	GTGATGGAGTGACGGAGTGATGAA	Design primers
2068044	CAAGATATAAGATACAAGACACAAGATT	Design primers
2108525	AAGGTACTAAGGCACTAAGGTAAT	Design primers
2114715	AAATATCCATCAATATCCACTAATATCAATTAATATCCTT	Design primers
2142928	AGGAAGAAGAAGTGGAAGGGGAAG	Design primers
2147741	AATTAAAATGAAATTTAAAAATAA	Design primers
2190264	CGAGATG-CGAGATG-CGAGAAG-TGAGATG-CGAGAAG-TGAGATG	Design primers
2190307	AAGACACAAGACGCAAGACGCAAGACAT	Design primers
2202128	TCTAAAATCTAAACTCTTAAATCTTAAA	Design primers
2462936	TTTAAACCTTTCAACCTTCAAACC	Design primers
2474295	ATAATACAATTTAATATAAAATATT	Design primers
2474950	TCACCCAATCAACTATT-CCACCCAATCAACTATT-CCACTCAATCATCTATT	Design primers
2475072	TCTCACATCTCAAATCTCATATCTAACA	Design primers
2478024	TCTTACATCTCACGTCTCAAGTCTCACATCTCACGTCTCAAATCTTACGTCTCGTGTCTCACG	Design primers
2489662	AAATCTA-AAATCTA-AACTCTA-CAATCTA	Design primers
2499451	ACTCAATCACTTAATCACTCAATC	Design primers
2519440	TAACCAAA-TAACCAAA-TAACCCAA	Design primers
2525336	TAAGCAAATAACCAAATAAGCAAA	Design primers
2525783	ATTAACCAATTAACCCAATAACCA	Design primers
2534490	TTAACCCAA-TTAACCCAA-TTAACCCTA	Design primers
2600444	CAGGTGCAGGCGCAGCTGCAGGTA	Design primers
2637123	GAC-GAT-GAT-GAT-GAC-GAT-GAT-GAT	Design primers
2640374	AACTTTTCAATTAGTTTTTCAATTAGTTTTTCAATT	Design primers
2667548	CCAACCTTCCAATCTTTCAACCTT	Design primers
2667662	AAAATCTACAATCTACAATCTAAAATCC	Design primers
2670215	ACAAGAAACAAGAGAAAAGAAACAAGAT	Design primers
2676723	TTTTAAACTTTTAACCTTTTAACC	Design primers
2678233	CAATTAACCAGTTAACCAAATAACCAATTAACCAAATAAC	Design primers
2678631	AATTAACC-AATTAACC-AGTTAACC	Design primers
2678666	CTTAACCCTCTTAACCTCTTTAAACCTCTTACCCTCTTTAAACCTCTTAACCCC	Design primers
2678731	CGTTAACCGTTAAGCGTTCACCGTTAAT	Design primers
2678829	AATTAACC-AATTAACC-AGTTAACC	Design primers
2678908	CAATTAAC-CAATTAAC-CAGTTAAC-CAAATAAC	Design primers
2679095	CAATTAAC-CAATTAAC-CAGTTAAC	Design primers
2679177	CGTTAAC-CGTTAAC-CGTTCAC-CGTTAAT	Design primers
2679273	CTAATTAACCAATTAACTAGTTAA	Design primers
2679505	TAAATCTAAAATCTTCAATCTAAAATCT	Design primers
2679813	CAATTAACCAGTTAACCAATTAACCAGTTAAC	Design primers
2679864	CTCTTAACCTCTTTAAACCTCTTTAAACCT	Design primers
2680039	CAGTTAAC-CAGTTAAC-CAATTAAC-CAGTTAAC	Design primers
2680121	CAATTAACCAGTTAACCAATTAACCAATTAAC	Design primers
2681828	CAATTAAC-CAATTAAC-CAAATAAC	Design primers
2702934	TTCCAACAT-TCCCAACAT-TCCCAACAT-TCCCAACAT	Design primers
2706699	ATTAACCAGTTAACCAATTAACCC	Design primers
2706846	CCAAAATCACCAACATCACCAACATCA	Design primers
2711097	AA-CT-AA-AG-AA-AA-AT-AA-TG-AA-AA-AC-AA-AG-AA	Design primers
2719446	TAACCAATTAACCAGTTAACCAATTAACCAATTAACCAAA	Design primers
2719768	GTTTAACGTTAAACATTTAACGCTTAAC	Design primers
2721348	TTACCCTTTCTCCTTTTCCCTTTCCCCTTTCTCCTTTTCCCTTTAACCTTTCACTTTTTTCCT	Design primers
2735710	TAACCAGT-TAACCAGT-TAACCAAT	Design primers
2735832	TTAACCCTTTTAACCCCTTTAACCTTT	Design primers
2785724	GATTGCAGTTCTTCATTGGTTGATTGCATTTCTTCATTGAGAGACTGCAGCTCTTCGTTGCTT	Design primers
2884247	TCTTACTTTGGTACTACTTTGGTGTTACTTTGCTACTACTTTGG	Design primers
2884751	AATGAATACAAATAAACACAAATGAATACA	Design primers
2939708	GATGAACTCATTGACCTTTTTGCTGAACTAGTTCACCTTTTTGGCGAACTCACTCACCTTTTT	Design primers
3013656	ACGTTAAAGGTTAAGCGTTAAATGTTAA	Design primers
3053389	CGTACCAAAGTAGTAGCAAAGTAGTATCAAAGTAGTACCAAAGT	Design primers
3149600	TATATTTCTACTTTATTTCCACCCTATTTCTACTAAATTTCCAC	Design primers
3211468	CATGGTACATCGTACTTGGTACTTGGTA	Design primers
3220623	AAATCTGCGAAATCCGCGGAATCTGCG	Design primers
3268548	GAAGATTGGAAAATTGTAAGATTG	Design primers
3283395	TCATTTTTAATCATTTCTGATCATTATCAA	Design primers
3489425	TTTATTTCTATATATTTCTACTTATTTCAA	Design primers
3522392	TTAATTTTCATTTTATTTTTAAAT	Design primers
3668915	ATGTCTTGTATCTTATATCTTGTGTCTTTTGTCTTATATCTT	Design primers
3674051	AATTTTAGATTGTAAATTTTAGATAGCAGATTTTAGATTGAA	Design primers
3690825	ACTCCTTCTGACTTTCCTTCTGACATTCCTTCTGAA	Design primers
3913247	ATTAAATCAAATTATATGAAATTAT	Design primers
3944655	TTGATAGGGGGTTGATACGGGCTTGATACGGAG	Design primers
4057809	ATTTTCTTTTATTTAATATTAATTT	Design primers
4095508	TCATGATCGTGATCATGGTCATGA	Design primers
4119447	ATTTTAGATTTTAAATTGTAGATTCTAG	Design primers
4186397	AAAAAAGAAAAAAAGAAAAAAGAAAAAAAG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

84150

GTACCAA-GTACAAA-GTACAAA-GTACCAA