Microsatellites /Tandem Repeats database

Genome: Helicobacter cetorum MIT 00-7128

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
49330CTATTTAATTCTATTGCATTATATTTTATTDesign primers
70457AA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GA-GADesign primers
87125GCCCTAACCCTAGCCCTTGCCCTADesign primers
136651ATAATCTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTA-AATACTTADesign primers
137669CATT-TATT-TATT-TATT-TATT-TATTDesign primers
232720GCGTTGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTT-TGAATGTTDesign primers
247140CG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers
274494GGTTATGAGACTTTATGAGAGTTTATTAGADesign primers
295507TATGGAAGATATTATTGAAGAGATTATGGGGGATATDesign primers
322761TGTTAGTA-TTGTTGTA-TTGTTGTA-TTGTTGTA-TTGTTGTA-TTGTTGTA-TTGTTGTA-TTGTTGTADesign primers
347919TTTTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCGCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAG-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTAT-ATCTCTTATDesign primers
370023TC-CG-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TCDesign primers
380517GAACACCACCATCATCATCAACACCATCATCATCACCACTATCATDesign primers
390036TT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CTDesign primers
402306ATTTTAGTTTAATTTATTTTATTTCDesign primers
405335ATGGTAAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAA-ATACCTAADesign primers
410008TTTTGTGATTTTTAGTGCTTTTTTGGGTTTDesign primers
415625AGTAGA-CTTAGA-CTTAGA-CTTAGA-CTTAGA-CTTAGADesign primers
417592GTAGAC-TTAGAC-TTAGAC-TTAGACDesign primers
470484TTTATAT-GTTATAT-GTTATAT-GTTATAT-GTTATATDesign primers
507377TTAGGT-AGAGGT-AGAGGT-AGAGGT-AGAGGT-AGAGGT-AGAGGT-AGAGGTDesign primers
521738AATGATATGCAGGATATGAATGACATGCAAGACATGCAAGATATGCAAGATATGAACGATATGCAGGATATGDesign primers
529908TGTAATTAAAC-TTAAATTAAAC-TTAAATTAAAC-TTAAATTAAACDesign primers
541550TAATTTTGTTAGTATC-ATACTTTGTTAGTATC-ATACTTTGTTAGTATC-ATACTTTGTTAGTATC-ATACTTTGTTAGTATC-ATACTTTGTTAGTATC-ATACTTTGTTAGTATCDesign primers
602418GGTAAGGTTTG-GTTTTAGTTTG-GTTTTAGTTTG-GTTTTAGTTTG-GTTTTAGTTTG-GTTTTAGTTTG-GTTTTAGTTTG-GTTTTAGTTTGDesign primers
602612GTTTTAGAGTGTGT-TTATTAGAGTGTGT-TTATTAGAGTGTGT-TTATTAGAGTGTGT-TTATTAGAGTGTGTDesign primers
639052AAAAGTTAT-GAAAGTTAT-GAAAGTTAT-GAAAGTTATDesign primers
666357GT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CT-CTDesign primers
687019ATATCC-TTATCC-TTATCC-TTATCC-TTATCCDesign primers
699630GTTTGAGTTTGGATTTGAGTTTGTDesign primers
799853CT-TG-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TTDesign primers
810300TTTTATAGCTT-TTTTATAGCTT-TTTTATAGTCTDesign primers
819688GCTCTCTTGCTTTCTTGCTCGCTTDesign primers
922458CTTTATTTTTCTTTGTTGTTCTTTAATCTTDesign primers
958253CATATGTGTATGTGTATGTGTATGTGTATGTGTATGDesign primers
987141ATTATTTTATATAATTTTATAATATATAATDesign primers
995164TTTCTTAT-ATTCTTAT-ATTCTTATDesign primers
1020769AAAAGCTTGAAAGCTTAAAAGCGTDesign primers
1034876TGGCTA-TGGCTA-GGGCTA-TGGCAADesign primers
1048342TC-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-ATDesign primers
1081687TT-AC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TCDesign primers
1113397TACTTTTATTTTTTCTTTTAGTTTDesign primers
1125750AAAGAAGAGAAAAAAGAGGAAGAAGAGDesign primers
1185166GACAACTG-AATTGCTG-AATTGCTG-AATTGCTG-AATTGCTG-AATTGCTG-AATTGCTG-AATTGCTG-AATTGCTGDesign primers
1197327AAAGAACAAGAAGAAGAAAGAGAADesign primers
1202321CATTTTGG-CTGAATGG-CTGAATGG-CTGAATGG-CTGAATGG-CTGAATGG-CTGAATGG-CTGAATGG-CTGAATGGDesign primers
1224959ATTTAAAAGCATTAAAGAGCATTTAAAAAADesign primers
1226525AAAAAAAAAAAAAAAAGAAAATAAADesign primers
1248336ATTACAAATTCTTTATTTTCT-TCATCAAATTCTTTATTTTCT-TCATCAAATTCTTTATTTTCTDesign primers
1249739CTTTTTCTTTGTCTTTATCTTTTADesign primers
1294994AACTTG-CATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTA-AATGTADesign primers
1323529TAGTCC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTAC-ATTTACDesign primers
1420279CGTTATCGTTGTCCTTATTGTTATDesign primers
1445099TGATTA-TTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTT-GTATTTDesign primers
1471730TTTATTTCATTATATTGTATTTTAGDesign primers
1502359AAAAAAAACAAAGAAGAAAAAACAADesign primers
1503180TGAACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTA-GCTACTTCTTTTTTADesign primers
1522222ATGAAAATTATGAAATTTATTAAAATTDesign primers
1556027AGAGATAGAGTTAGAGATAGAGATDesign primers
1583687AGTATTTCTTAA-TATATTTCTTAA-TATATTTCTTAA-TATATTTCTTAA-TATATTTCTTAADesign primers
1626177ACTCAAGAATACTAAAGAAGTCTAAAGAATDesign primers
1633993AATATCTTATAGAATCTTATAGAATCTTATDesign primers
1637069CTATAAA-ACAAGAA-ACAAGAA-ACAAGAA-ACAAGAA-ACAAGAA-ACAAGAA-ACAAGAA-ACAAGAADesign primers
1640897TTGCATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATT-AGAGATTAGATTDesign primers
1659862AATATTTTTAAAATATCTTTATTATTTTTTTAADesign primers
1668218TTCTAGATTTATAGT-CTTAAGATTTATAGT-CTTAAGATTTATAGT-CTTAAGATTTATAGT-CTTAAGATTTATAGT-CTTAAGATTTATAGTDesign primers
1776596ACTAATGGAGCTAATGGAACTAATGGGGCTAATGGADesign primers
1802525TCATCTTCATATTCTTCTTCATCADesign primers
1823850CACATCGCCCCCATCGCCCCCATCGCCDesign primers
1835451AAACTAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAG-ATATAAGAGDesign primers
1848831CGCTGGCTCTGGAGCTGGAGCTGGDesign primers
1866184CTTTTTAAGTTC-TGTTTTAAGTTC-TGTTTTAAGTTCDesign primers
1896543TAAAAATTTTTTCTAAATTTTTTAATAATTTTADesign primers
1912807TATTATTT-AGATATTT-AGATATTT-AGATATTT-AGATATTT-AGATATTTDesign primers
1947414ATCAGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGAT-TAGCGATDesign primers

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