Microsatellites /Tandem Repeats database

Genome: Escherichia coli W

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
75286GCAGCAACAGCAGCAGCGCCAGCADesign primers
165950TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
249144TCCTGC-TCTGAC-TCTGAC-TCTGAC-TCTGAC-TCTGAC-TCTGAC-TCTGAC-TCTGACDesign primers
339444TGAGGGAGAGGGTTAGGGTGAGGCDesign primers
841234AGTTAATTATAATATAATTATAAGTTAATTAAADesign primers
847513AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
1041805GATGAA-GATGAA-TATGAA-GATGACDesign primers
1043451GCAGCAGCAGTATCAGCAGCCGCADesign primers
1165558ATTGGGATTGTGATTGGCATTGCGDesign primers
1640193TATTTTTAGTTTTATTTTTATTGTDesign primers
1791431TATTCTCTGTAGTAATCTCTGTTGTATTCTCTGTAADesign primers
2048891CGGGATCGGCATCGGCATCGGGTTDesign primers
2161629TATAAACCAGATTTAATAACAACGAACTAGATTTAATAACAACAAACTAGATTTAATAACDesign primers
2480214TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
2592020CCTACTCCG-ACTACTCCG-ACTACTCCG-ACTACTCCG-ACTACTCCGDesign primers
2630882TTCTTG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGGDesign primers
3095996GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3368385CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3694822TT-TT-TG-TT-TT-AT-TT-TT-TT-GT-TT-TT-AT-TT-TTDesign primers
3901097CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
3990136CCCTCACCCTAACCCTCTCCCTCADesign primers
4210787CGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGCDesign primers
4325695AATGCCAATGGCGATGCCAATTCCDesign primers
4419455CGCGGTAAATCTCGATAAATGGCGGTAATTDesign primers
4630579ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
4777402ACTCAACCTAAGTCAACCTGATTCAATCTADesign primers
4879904AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers
4882194AAAATCTATTCAAGTATCTATTCACGAATCTATTCADesign primers

Please help us improve this resource by reporting problems, suggestions etc.