Microsatellites /Tandem Repeats database

Genome: Escherichia coli UM146

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
115753CCGGTCGTGCAGGTCGTGCTGGTCGTGDesign primers
545140AACACAAC-AACACAAC-ATCACAACDesign primers
584654CACCTG-CGCCTG-CGCCTG-CGCCTG-CGCCTGDesign primers
640766ATCAGGGAA-TTCAGGGAA-TTCAGGGAADesign primers
708958ATTCTGACCCGTCAAAATCTGACGCATCAAAATCTGCCCCGTCAADesign primers
1008215TTCCTTTCTTGCTTTCTTCCTCTCDesign primers
1042694ATGTTAA-GACTCAA-GACTCAA-GACTCAA-GACTCAA-GACTCAA-GACTCAA-GACTCAA-GACTCAADesign primers
1042762AAGGTTA-AGACTCA-AGACTCA-AGACTCA-AGACTCA-AGACTCA-AGACTCA-AGACTCA-AGACTCADesign primers
1476934ATGGTATC-TGTGTATC-TGTGTATC-TGTGTATC-TGTGTATC-TGTGTATCDesign primers
1602588ACCAGCAACCAGCGACCGGCAGCCAGCADesign primers
1984913ATGGTGGTGGTGAGT-CTGGCGGTGGTGAGT-CCGGCGGTGGTGAGT-CCGGCGGTGGTGAGT-CCGGTGGTGGTGAGT-CCGGTGGTGGTGAGT-CTGGCGGTGGTGAGTDesign primers
1985022TGGCGGTAGTTC-TGGCGGTAGTTC-TGGCGGTGGCTCDesign primers
2194784CCACCGCCTCCGCCACCCGCACCGDesign primers
2246105TTCTTGATCTGTATCTTTATCTGTATCTTTATCTGTDesign primers
2596065GAATATGAAC-AGATATGAAC-AGATATGAACDesign primers
2721542TCACGAACAATATCGAACAACCGCGAACAADesign primers
2874123TCTGCGGCAGCTTTTGCTGCAGCGGCTTTTTCAGCTGCTGCTTTTDesign primers
3422039TCTGGCAAAGAGTTAATAAATGGCGAAGAGTTAATAAATGGCGAAGAGTTAATADesign primers
3478079GTCGTG-GTCGTG-ATCGTG-GTGGTG-ATCGTGDesign primers
3497034TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
3989974GCGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTGDesign primers
4118446AATGCCAATGGCGATGCCAATTCCDesign primers
4386019ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
4526336AGCAGAAGGAGAAACAGAAGCAGCDesign primers
4556482ATGTTCTGCG-GGGTTCTGCG-GGGTTCTGCG-GGGTTCTGCGDesign primers
4606237GKGATACCG-GGGATACCG-GGGATACCG-GGGATACCG-GGGATACCGDesign primers
4738172AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers
4740441AATCTATTCAAGTATCTATTCACGAATCTATTCATTDesign primers
4838032GCAGCAACAGCAGCAGCGCCAGCADesign primers

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