Microsatellites /Tandem Repeats database

Genome: Neisseria meningitidis G2136

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
18081ATCGGGGTCGGGTTCGGGATTGGGDesign primers
212058CGGTGGGAATGGTGGGAACGGTGGGATDesign primers
213956ACAATCCAACCAAAACCAACCCAACCAAAACCAACCCAACCCAAADesign primers
214012AGCCAATC-CGCCAATC-CGCCAATCDesign primers
214108TGGTGGAATGGTTGAATGGTGGGADesign primers
215518GGATTGGTGGGGTTGGTGGGATTGGTGDesign primers
283073CCGCCAAAG-CTGCCAAAG-CTGCCAAAG-CTGCCAAAGDesign primers
283110TGCCAAAGT-TGCCAAAGT-TGCCAAAGT-TGCCAAAGT-TGCCAAAGT-TGCCAAAGT-TGCCAAAGTDesign primers
372962TGGGAATACCCGAATCGTCAGGAATACCTGAATCGTCAGGAATACCTGAATCGTDesign primers
375754GCTATTATT-GCTATTATT-GCTATTCTT-GCCATTATTDesign primers
378453AACCTGCACCGCGTCATTCCCACGAACCTACATCCCGTCATTCCCGCGAACCTACATCCCGTCATTCCCACGDesign primers
401849CCGTCGCCGCCGCCGTAGTCGTCGDesign primers
426246TGGTTTGTTTTGCTGGTGCTGCCG-CCTGTTGTTTTGCTGGTGCTGCCG-CCTGTTGTTTTGCTGGTGCTGCCGDesign primers
451524AAAGCCAAAGACGAAGCCAAAGCCDesign primers
530339GGAAGGGGAGGGCGAAGGAGAAGGDesign primers
550195ACGGCGACGGCTTCGGCGACAGCGDesign primers
564426TTCGTGGTCATG-ATCGTGGTCATG-ATCGTGGTCGTGDesign primers
604905ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACACDesign primers
640126GGGTGAAGAGGATGAAGACGGTGAAGADesign primers
671115TTTGGCTTTGGGCTTGGCTTTGGCDesign primers
706485CGGTTTCGCTTTCGGTATCGGTCTDesign primers
723850GAGGCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCATDesign primers
809851GAAACG-GATACG-GATACG-GATACGDesign primers
910667GCGGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGADesign primers
973357ATTTTGCCGAAAACGATACCGCCGAAAACGATACCGCCGAAAACGDesign primers
979841CTGTCATTGGTGTTTTCATTGGTGTTTTCATTGGTGDesign primers
994510GGTTTCGGTATCGGGTTCGGCTTCDesign primers
1053361AGCGGGCTGTAGAGATGGCTGTAGAGATGGCTGTAGDesign primers
1053400CGGGCTGTAGAG-ATGGCTGTAGAG-ATGGCTGTAGAGDesign primers
1053449ATGGCTGTAGAGA-CGGGCTGTAGAGA-CGGGCTGTAGAGA-CGGGCTGTAGAGADesign primers
1053502GGCTGTAGAGACG-GGCTGTAGAGATG-GGCTGTAGAGATG-GGCTGTAGAGATGDesign primers
1064580GCCGAAGCCGTAGTCGAAGCCGAADesign primers
1184183CAGGG-GCTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTG-GGTTGDesign primers
1258780TTCTTATCTTTTTTATCTTTCTTATCTDesign primers
1261462CCTGACGGATACGCTCTTGGCGGATACGTTCTTGGCGGATACGCTDesign primers
1300807CGAAGGTTTCAAGAAAGAAGGCTTTAAGAAAGACGGTTTCAAAAADesign primers
1307802TAAT-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCC-AGCCDesign primers
1345062AGATAACAAAATAACAAAATAACADesign primers
1420053GCGGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGADesign primers
1423767AGCTGCTTCAGTTACAGCTTC-TTTGGCTTCAGTTACAGCTTC-TTTGGCTTCAGTTACAGCTTCDesign primers
1459602CGCC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1475141AGCCGCTGAAGCTCCCGCTGCTGAAGCACCTGCCGCCGAAGCTCCDesign primers
1475214CCCGCTGCTGAAGCTGCCGCTACTGAAGCACCTGCCGCCGAAGCTCCCGCTGCTGAAGCTDesign primers
1493431GACGAAAACGAAGACGACGAAGAADesign primers
1500322CAACAT-CAGCTT-CAACTT-CAACTT-CAACTT-CAGCTTDesign primers
1500877CTTCTTCGGTTTCTTCGGCTTCTTCGGDesign primers
1503315TTCGTCATCCCCACGAACCTGCATCCCGTCATTCCCACGCACCTGCATCCCGTCATTCCCACGAACCTACATDesign primers
1503579GAAACCTGCACCACGTCATTCCCA-CGAACCTGCACCACGTCATTCCCA-CGAACCTGCATCCCGTCATTCCCA-CGAACCTGCATCCCGTCATTCCCA-CGAACCTGCATCCCGTCATTCCCA-CGAACCTGCATCCCGTCATTCCCADesign primers
1545232CCTTTT-CCTTTT-TCTTTT-CCTCTTDesign primers
1593897AACCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCTDesign primers
1747412CACGGAAACCTGCACCACGTCATTCCCACGAACCTGCACCACGTCATTCCCACGAACCTGCACCACGTCATTDesign primers
1767962AACCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCTDesign primers
1830115GGGCGAAAACAGCCGAAAACAGCCGAAAACDesign primers
1834413CGCGGGTAG-CGGGGGTAG-CGGGGGTAG-CGGGGGTAGDesign primers
1856960TACCGTATTTTCC-CATCGTATTTTCC-CATCGTATTTTCC-CATCGTATTTTCC-CATCGTATTTTCCDesign primers
1904970CGAC-CGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCTDesign primers
1920285GAAAGGAATGAAGGGAATGAAAGGAATDesign primers
1928811GGGCGAAAACAGCCGAAAACAGCCGAAAACDesign primers
1934162TTTTAGGTTTCTGTTTTCAGGTTTCTATTTTTGGTTTTCTGTDesign primers
1999679TGCGGTTGGGGCTGCGGTTGGGGTTGCAGTTGCGGCDesign primers
2006983TTTTCGTCATTCCCGCGCAGGCCTCGTCATTCCCGCACAGGCTTCGTCATTCCCGCGCAGDesign primers
2009987TCGCGGGAATGACGAAAGGTTGCGGGAATGACGAAAAGTGGTGGGAATGACGAAAAGDesign primers
2015059CAAG-AATT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAATDesign primers
2104526CA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-ADesign primers

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