Microsatellites /Tandem Repeats database

Genome: Neisseria meningitidis WUE 2594

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
43199TTCGTGGGAATGACGGGATGTAGGTTCGTGGGAATGACGTGGTGCAGGTTCGTAGGAATGACGTGGTGCAGGDesign primers
43675TTCGTGGGAATGACGGGATGTAGGTTCGTGGGAATGACGTGGTGCAGGTTCGTAGGAATGACGTGGTGCAGGDesign primers
51337TTTGGCTTGGGCTTTGGTTTTGGGDesign primers
131848AAAACAGAAAACAGCCAAACAGAAAACAGCGAAACAGGAAAAAGCDesign primers
131900AAAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAACAGCGAAACA-GGAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAACAGCGAAACA-GAAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAAAAGCCAAACA-GAAAAAAGCCAAACADesign primers
136407ACTTTCGTGGGAATGACGGAATGTAGGTTCGTAGGAATGACGGAATGTAGGTTCGTAGGAATGACGGGATGTDesign primers
187807GCAA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTADesign primers
193236CGTCATTCCCACCACTTTTCGTCATTCCCACCGCTTTTCGTCATTCCCGCAACCTTTDesign primers
196206TCCCGCCTGCGCGGGAATGACGAGGCCTGCGCGGGAATGACGAAGCCTGCGCGGGAATGADesign primers
203402GCCGCAACCGCAGCCCCAACCGCADesign primers
206702AAAATCCCCCAAAATCCCCTAAATTCCCACDesign primers
220171TATGGGCGGCATGGGCGGTATGGGTGGDesign primers
220646TCCGTGGGAATGACGGAGAGTCGCGGGAATGACGGAGAGTCGCGGGAATGACGGAGADesign primers
220704TTGCGGGAATGACGGAGAG-TTGCGGGAATGACGGAGAG-TTGCGGGAATGACGGAGAGDesign primers
242127GAAACGCAACCTGGAACACAACCTGGAACACAACCTDesign primers
348750TGGGAATACCCGAATCGTCAGGAATACCTGAATCGTCAGGAATACCTGAATCGTCAGGAATACCCGAACCGTDesign primers
353243AACCTGCACCGCGTCATTCCCACGAACCTACATCCCGTCATTCCCGCGAACCTACATCCCGTCATTCCCACGDesign primers
380827CCGTCGCCGCCGCCGTAGTCGTCGDesign primers
403425GGTTTGTTTTGCTGGTGCCGCCGCCTGTTGTTTTGCTGGTGCTGCCGCCTGTTGTTTTGCTGATGCCGCCGCDesign primers
428645AAAGCCAAAGACGAAGCCAAAGCCDesign primers
501510CTTTGCCTGTGCCTTTGTCTTTGGDesign primers
505261GGAAGGGGAGGGCGAAGGAGAAGGDesign primers
546603TTCGTGGTCATGGTCGTGGTCATGATCGTGGTCGTGDesign primers
586063ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAA-ACAACAADesign primers
594701GCGAGGGCGCGGGCGAGGGCGACGDesign primers
607243GGGTGAAGAGGATGAAGACGGTGAAGADesign primers
638581TTTGGCTTTGGGCTTGGCTTTGGCDesign primers
651343TTCGTGGGAATGACGAAAAGTGGCGGGAATGACGAAAAGTAGCGGGAATGACGAAAADesign primers
691600GAGGCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCAT-TTCTCATDesign primers
842096GGAAG-AGAAG-AGAAG-AGAAG-AGAAGDesign primers
903574ATTTTGCCGAAAACGATACCGCCGAAAACGATACCGCCGAAAACGDesign primers
1009809ATGGGTTGTAGA-GATGGCTGTAGA-GATGGCTGTAGA-GATGGCTGTAGA-GATGGCTGTAGA-GATGGCTGTAGA-GATGGCTGTAGA-GATGGCTGTAGADesign primers
1009906ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAG-ATAGCTGTAGAGDesign primers
1010063TGGGTTGTAGAGA-TGGGTTGTAGAGA-CGAGTTGTAGAGADesign primers
1020641GCCGAAGCCGTAGTCGAAGCCGAADesign primers
1086710AGGCGCAGGCGTTGGCGCAGGCGGDesign primers
1139432CAGGG-CTTGG-GTTGG-GTTGG-GTTGG-GTTGG-GTTGG-GTTGG-GTTGG-GTTGG-GTTGG-GTTGGDesign primers
1219725TTCTTATCTTTTTTATCTTTCTTATCTDesign primers
1222407CCTGACGGATACGCTCTTGGCGGATACGTTCTTGGCGGATACGCTDesign primers
1263132GAAGGTTTCAAGAAAGAAGGCTTTAAGAGAGACGGTTTCAAAAAADesign primers
1295630TAAGGCGTGCGGACGTATTCT-GCCTGCGTGCGGACGTATTCT-GCCTGCGTGCGGACGTATTCTDesign primers
1298473GGTTTTCAGC-TGTTTTCAGC-TGTTTTCGGCDesign primers
1376710CGGAA-GAGAA-GAGAA-GAGAA-GAGAA-GAGAA-GAGAA-GAGAADesign primers
1430282AGCCGCTGAAGCTCCCGCTGCTGAAGCACCTGCCGCCGAAGCTCCDesign primers
1430347CCGAAGCTCCCGCTGCTGAAGCTGCCGCTACCGAAGCACCTGCCGCTGAAGCTGCCGCTACCGAAGCACCTGCCGCTGAAGCTCCTGCTGDesign primers
1448211GACGAAAACGAAGACGACGAAGAADesign primers
1456815CAGATACATTCCGTCATTCCCACGAACCTACATCCCGTCATTCCCACGCACCTGCATCCCGTCATTCCCACGDesign primers
1510804CCGCCCCGACCCGCTCCGCGCCGCCDesign primers
1511078GCAATTGCGTAGTAGTTGCGTAGTAGTTGCGTADesign primers
1511136GCCCACCAAC-TCCCACCAAC-TCCCACCATCDesign primers
1546473ACCAATGCCAGCAATGCCATCAATGCCDesign primers
1578946CAGCTCCTGCTGCTTCCGCTCCCGCAGCTTCTGCTCCTGCAGCCTDesign primers
1580087ACCGTCATTCCCGCCACTTTCCGTCATTCCCGCAACTTTTCGTCATTCCCGCAACTTDesign primers
1581409ACCTT-CTCTT-CTCTT-CTCTT-CTCTT-CTCTT-CTCTT-CTCTTDesign primers
1750396AAACC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTC-TTCTCDesign primers
1819908AACCTG-AATCTG-AATCTG-AACCTGDesign primers
1828096CTCCTCCTCATCCCCCTCGTCCTCDesign primers
1858509CCG-CTG-CCG-CTA-CCG-CCG-CCG-CCGDesign primers
1858568GCCGCTACCGTT-GCCGCTACCGTT-GCCGTTGCCGTTDesign primers
1863120GCTGATGCCGATGCTGGTGCTGACDesign primers
1864500CGATAC-CGGTAC-CGATAC-CGATAC-CGATACDesign primers
1931025GACC-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTTDesign primers
1966019GGCGGCAAC-TTTGGCAAC-TTTGGCAAC-TTTGGCAAC-TTTGGCAAC-TTTGGCAACDesign primers
1966074TTGGCAACT-TTGGCAGCT-TTGGCAGCT-TTGGCAGCT-TTGGCAGCTDesign primers
2036376CAGCCCACC-AATCACACC-AATCACACC-AATCACACC-AATCACACC-AATCACACCDesign primers
2038121ATTCCACCAATCCCACCAACTCCACCADesign primers
2040156CGGTGGGAATGGTGGGAACGGTGGGATDesign primers

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