Microsatellites /Tandem Repeats database

Genome: Neisseria meningitidis 8013

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
32878AACCGCCGAACG-CACCGCCGAACG-CACCGCCGAAAGDesign primers
78338TCTATAAGTATATAAGTATATAAGDesign primers
288404ATCCGCCAA-AGCTGCCAA-AGCTGCCAA-AGCTGCCAA-AGCTGCCAA-AGTTGCCAADesign primers
288459GTTGCCAAA-GTTGCCAAA-GTTGCCAAADesign primers
312312CATTCCTTTCATTCCCTTCATTCCTTTDesign primers
329735ACTG-AAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAGDesign primers
378219AACGGGAAAATAC-GATGGGAAAATAC-GATGGGAAAATAC-GATGGGAAAATAC-GATGGGAAAATACDesign primers
392312CCCGAACCCGAGCCAGAACCCGAADesign primers
414151ATTTTGCCGAAAACGATACCGCCGAAAACGATACCGCCGAAAACGDesign primers
466341GCGGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGADesign primers
486866TTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGTGGTGCAGGTTCGTGGGAATGACGTGGTGCAGGDesign primers
487045TTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGTGGTGCAGGTTCGTGGGAATGACGTGGTGCAGGDesign primers
491429AAAGGTAAAAACGGTAAAAACGGTAAADesign primers
512501AGATTTAAATTTGGATTTTGATTTDesign primers
581262CCAAGTTCAAGCAAGCCAAGCCCAAGCGAGTCAAATTCAAGCAGGDesign primers
589493CCAAGTTCAAGCAAGCCAAGCCCAAGCGAGTCAAATTCAAGCAGGDesign primers
733903GCGGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGADesign primers
736079TTCGTGGGAATGACGAAAA-GTTGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTTGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTTGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTTGCGGGAATGACGAAAA-GTGGCGGGAATGACGAAAA-GTTGCGGGAATGACGAAAADesign primers
775206ATTGCCATCGCCGTTGCCATTACCDesign primers
788600TTAAA-ATCAA-AAATA-AAATA-AAAADesign primers
831079TTCGTGGGAATGACGTGGTGCAGG-TTCGTGGGAATGACGTGGTGCAGG-TTCGTGGGAATGACGGAATGTAGG-TTCGTGGGAATGACGGGATGCAGG-TGCGTGGGAATGACGTGGTGCAGG-TTCGTGGGAATGACGGGATGTAGGDesign primers
858427GCTTCGGCAGCAGGAGCTTCAGCGGCAGGTGCTTCGGTAGCGGCAGCTTCAGCAGCGGGAGCTTCGGCGGCAGGTDesign primers
858516AGCTTCAGCAGCGGGAGCTTCGGCGGCAGGTGCTTCGGTAGCGGGAGCTTCAGCGGCAGGDesign primers
874269TTTT-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
915195AACCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCTDesign primers
1015842GAGGCGGAGGTGCAGGCGGAGCCGDesign primers
1023136ATAA-TTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGGDesign primers
1069361GGAAGAGCGTATCCGCCAAGAACGTATCCGCCAAGAGCGTATCCGDesign primers
1072067GATAAGAAAGATAAAAAAGATAAGAAGDesign primers
1125083GTGGGAGAGGGC-TAGGGAGAGGGC-TAGGGAGAGGGCDesign primers
1148111TGCTG-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAAC-CCAACDesign primers
1280612CCCATCTCTACAACTCGTCTCTACAACCCATCTCTACAACCCATCTCTACAACCCATCTCTACAGDesign primers
1280678CATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-CATCTCTACAGC-TATCTCTACAGC-CATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-TATCTCTACAGC-CATCTCTACAGC-CATCTCTACAGC-CATCTCTACAGC-CATCTCTACAGC-CATCTCTACAAC-CATCTCTACAACDesign primers
1366788AAATCCCCAAAATCCCCTAAATTCCCADesign primers
1434864AACCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCT-TCTCTDesign primers
1602678TATGAGA-AATGAGA-AATGAGA-AATGAGA-AATGAGADesign primers
1654380GCCAAAGCCAAGCCCAAAGCCAAADesign primers
1709154TCGCCC-TCGCCC-GCGCCC-TCGCACDesign primers
1717646TCTGGTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTGDesign primers
1790756CGCCTTCTCCTTCGCCCTCCCCTTDesign primers
1794858GCTCAAGCACAAGCTGAAGCCCAADesign primers
1796918ATTTTGCCGAAAACGATACCGCCGAAAACGATACCGCCGAAAACGDesign primers
1858158GGCTTTGGCTTCGTCTTTGGCTTTDesign primers
1893079CCGGCAAAACAACAGGCGGCGGCATCAGCAAAACAACAGACGGCAGCACCAGCAAAACAACAGGCGGCAGCADesign primers
1956024TTTCGTGGGAATGACGGGATGCAGGTTCGTGGGAATGACGTGGTGCAGGTTCGTAGGAATGACGTGGTGCAGDesign primers
1957527ATGATGGTTCGGGTATTCCTGACGATTCGGGTATTCCTGACGATTCGGGTATTCDesign primers
1957582TGACGATTCAGGTATTCC-TGACGATTCAGGTATTCC-TGACGATTCAGGTATTCC-TGACGATTCAGGTATTCC-TGACGATTCAGGTATTCC-TGACGATTCAGGTATTCC-TGACGATTCAGGTATTCC-TGACGGTTCGGGTATTCCDesign primers
2000378AAAG-GAAG-GAAG-GAAG-GAAG-GAAGDesign primers
2029440GGGCGAAAACAGCCGAAAACAGCCGAAAACDesign primers
2081224CCCATACCGCCCATGCCGCCCATATCGDesign primers
2095383GCGCTGCGGTTGGGGTTGCGGTTGGGGCTGCGGTTGDesign primers
2106200TTTCGCGGGAATGACGAAAGGTTGCGGGAATGACGAAAGGTTGCGGGAATGACGAAADesign primers
2111359GAAT-CAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAADesign primers
2164541CAGGCTTTTTTCTGT-TTGGCTGTTTTCTGT-TTGGCTGTTTTCTGT-TTGGCTTTTTTCTGT-TTGGCTTTTTTCTGTDesign primers
2233455CATGTTTTTAGATGATGTAAATGTTTTTTTAGATGATTTAAATGTTTTTTTAGATGATTTAAADesign primers

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