Microsatellites /Tandem Repeats database

Genome: Sulfolobus islandicus HVE10/4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
102827TTTTACCATTTTTCCATTTGACCADesign primers
143564GGTGGAAGAAGATATGGAAGAAGAGGCGGAAGAAGADesign primers
213732AATAAAATTAAAAATATAAGTAAADesign primers
249494TTTTTATTTTAATTTTTGTTTTAADesign primers
510354TACTTATATTTAAACTTATATTTADesign primers
585535AGTTAAACT-AGTTAAACT-AGTTAAAATDesign primers
640601CCTAGCCCTATCCCTAGTCCTAGCDesign primers
686830AATTTAAATTTCAATTAAAATTTTDesign primers
729089AAAAGTAATAAGAAGAAATAAGAAATAATADesign primers
874690TTC-TTC-TTC-ATC-CTC-TTC-TTC-ATCDesign primers
960849ACT-ACA-ACA-AGT-ACA-ACA-ACT-ACA-ACADesign primers
1081138CTCAAGCTCAAACTCAGGGTCAAGDesign primers
1117138ATAAAATAAGACAAAATAACATTAADesign primers
1145631CACCTATTAACAACTATTTACACCATTTAADesign primers
1176600TTTTAAAAATATTTATAAATTCTTATAAATDesign primers
1222350ATATCTCTTAATATTGCTTAATATGCCTTADesign primers
1417245TCTTTCCTTTTCTCTCCTTCTCTTTCTCTTDesign primers
1580572TTATATTTAATTTTATTTCATTATATGTTADesign primers
1653170GTCGTTGTAGAAGTTGTTGTAGTAGTTGTTGTAGAGDesign primers
1673589AATAGAATTAGAAAGAGAAGTAGADesign primers
1768234AAATAATGGAAATATTGGAAATAATGADesign primers
1855068CTTAAATCTTCTTCAGTCTTCTTTAACCTTDesign primers
1889101AAAGAAATTAAACGGAATTATAAGAAATTCDesign primers
2312191AGTAATCGTAATAGTGATAATAATDesign primers
2362060TA-TA-AA-TA-TA-TA-AA-TA-AA-GA-TA-AADesign primers
2363728TTTCTCTTCTTATCTTATCTTTTATDesign primers
2379037TTAGAAGTAATTAAAAATAATTAGCAGTTADesign primers
2397630CTTCTTCTTTTTCTTCTCCTCCTTDesign primers
2552841CTTCTTCAACTACAACTTCTTCACTTACTACTACAACAACTACAADesign primers
2552917AAC-TAC-TAC-TAC-AAC-AAC-AAC-TACDesign primers
2553025AAGAGG-AAGAGG-TAGAGG-AGGAGGDesign primers
2597770TATTTTTATTTCCATTTTTATTATDesign primers
2618495GAAAAAGAAGAACAAAAAGGAAAADesign primers
2626611TAAAAG-TAAAAG-TAAACG-AAAAAGDesign primers

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