Microsatellites /Tandem Repeats database

Genome: Bacillus subtilis subsp. subtilis RO-NN-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
640989CATGGGCGG-CATGGGCGG-TATGGGCGGDesign primers
804686CAACAGGAGCAACGGGAGCAACAGGAGCAACAGGAGDesign primers
804745GGATCAACGGGAGCAACGGGACCAACGDesign primers
804943GGAGCAACAGGACTAACGGGAGCAACAGGTCCAACCGGATCAACAGGATCAACGGGAGCGACGGGACCAACGDesign primers
871035TT-TT-TA-TT-TT-TT-TG-TT-TT-TC-TA-TT-TC-TT-TTDesign primers
1050976CT-TT-TT-TT-CT-AT-TT-TT-CT-TT-TT-TTDesign primers
1257647CCGTAACCTCCGCCATATCCTCCGCCATAACCGCCGDesign primers
1349810AA-AC-AA-AC-CA-AA-AG-AA-AA-AA-AC-AC-ADesign primers
1508657CGCATGCTTTTTATTTTTTATT-GAATTGCTTTTTATTTTTTATT-GAATTGCTTTTTATTTTTTATT-GAATTGCTTTTTATTTTTTATT-GAATTGCTTTTTATTTTTTATTDesign primers
1666639TCAAAATACTCAAAACACTCAAAATGCDesign primers
1840134CCAAAACCAAATCCATAACCAAATDesign primers
1883255ATCATCATAATACTTTTTATCATGGTCATAATACTTTTTGTCGTAATCATAATGTTTTTTATCATGGTCATAATACTTTTTGTCDesign primers
1899617TTAATAGATCAATAGATTAATGGADesign primers
2165293TATTATATTGTAATAAATTATATCADesign primers
2367603TC-TT-TG-TT-AT-TC-TA-TG-TT-TT-TC-TC-TG-TT-TTDesign primers
2578046AAAAAATAAAAAATTAAGAAAATADesign primers
2671812CTC-TTC-CTC-TTG-TTC-TTC-CTC-CTCDesign primers
2950127TCATCTTCATCCTCTTCTTCATATDesign primers
3149686TATTATATAACGTTATATAACATTATATATDesign primers
3372464TTTTTTGTTTTTTTAATTTTTTATTDesign primers
3697128CAGCAAGGACAACAAGGACAGCAGGGADesign primers

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