Microsatellites /Tandem Repeats database

Genome: Marinobacter hydrocarbonoclasticus ATCC 49840

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
106049GAGCGG-GAGCGG-GAGCAG-GAGCGGDesign primers
202453GGCTCTGGTTTG-GGCTCTGGTTTG-GGTTCTGGCTTGDesign primers
378032TACCACTACCTCAACCACTACAACDesign primers
415606TCTGTTACCTGCTGTTACTTTCTATTACATDesign primers
604653CTGCTGCTGCCGCTGTTGCTGCCGDesign primers
738455TTGTCC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGC-CAGAGCDesign primers
967203GACCTGGACCAGGTCCTGGGCCTGDesign primers
1009069CCCAGATTT-TCCAGATTT-TCCAGATTTDesign primers
1382204GCCCCTGCGCCTGCACCTGCCCGTDesign primers
1560672GTGCTGGTGCCGGTACTGCTGCTGDesign primers
1864658GTGCTGGTGATGGTGCCGGTGGTGDesign primers
2109945GGCCCTGGCCCGGGCGCTGGCGCTDesign primers
2424215CCAGCCCGCCAGCTCGGCAGCCCGDesign primers
2544485TCAGTTCTT-TCAGTTCTT-TCAGTTCATDesign primers
2760363CCATCACCATCCCGATCACCGTCADesign primers
2817059TGTCACTATCACTGTCACTGCCACDesign primers
3071422CAGGGCCAGGGGCAAGGCCAGGCCDesign primers
3435018GTTGTCGGAATTATCGGAGTTGTCAGAGTTATCTGAGTTGTCCGAATTGTCGGADesign primers

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