Microsatellites /Tandem Repeats database

Genome: Riemerella anatipestifer DSM 15868

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
45401ATAAAAATGAAAATAAATATAAATDesign primers
203227AGAATAAAATAGAAATAAATAAAATAAAAGDesign primers
215324GTT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
332774TTAAAATTAAATTTTAAATAAAAADesign primers
339671AACCATAACCAAAGGATAACCAAAGGATAACCADesign primers
342030ACGGTTCTTGATACGGTTGTTAATACAGTTATTGATDesign primers
365669AAAAAAGAAAGAAAAAAAGAAAACADesign primers
391538AATAAAAATTATTAAAAATGAAAAAAATTTDesign primers
597507ATAGCTGCCGTAGGGCTGCCGTAGGGCTGCCGTDesign primers
692973TAC-TAC-CAC-TAC-TAC-CAC-TAC-AACDesign primers
699669AGTTTTACTTTTAGGTTTTGTTTTDesign primers
703067AAAAAAGAAAAAAAGAAGAAGAAAAAAAAGAAAGAAAAATAAAACDesign primers
769492ATTTATATTTCTATTCATATTTTTDesign primers
834696CTTTATCTTCATCTTTAAGTTTATDesign primers
943390TGCCGCTGCTGCTGCCGTTGCCGCDesign primers
1101321ACAAAAAATACCAAAAATTAAGAAAAAATADesign primers
1142559ATATTAG-ATGTTAG-ATGTTAG-ATGTTAGDesign primers
1164939AAAAAGAAAAGAAGAAAAATAGAADesign primers
1203201GCTGTTGATTCTGCTGCTGCTGTTGTTGATTCTGCTGCTACTGTTGTAGATTCTGCTTCTACTDesign primers
1203281TGG-TGC-TGC-TGC-TGA-TGC-TGC-TGCDesign primers
1268463AAAAAACTAAAAAACAAAAAAAGTDesign primers
1365290TGGCAGTGGTAGTGGCGGTGGTAGDesign primers
1499504TACGGT-TACGGT-TATGGC-TACGGT-TATGGC-TACGGT-TATGGC-TACGGTDesign primers
1513446TTTATATTTTTACATTTTGATATTDesign primers
1630381CTTTTCTTCTCTTTCCTTTTCTTTADesign primers
1682758GTAC-TTCC-TTCC-TTCC-TTCC-TTCC-TTCC-TTCC-TTCCDesign primers
1851414AA-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
2097206TTTTGTTTGGTATTGTTTTCTTGTGDesign primers
2140122CCTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGDesign primers

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