Microsatellites /Tandem Repeats database

Genome: Paenibacillus mucilaginosus 3016

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
375734GCTGAAAA-GCTGAAAA-GCTGAAAADesign primers
424093GAAGCGTAAGGCA-GAAGCGTAAGGCA-GAAGCGTAAGGCADesign primers
899402GCATCGCCACCGCCCC-GCATCGCCACCGCCCC-GCATCGCCACCGCCCCDesign primers
1190667AGTAAGA-AGTAAGA-AGTAAGA-AGTAAGADesign primers
1488330AGACGGACTAA-AGACGGACTAA-AGACGGACTAA-AGACGGACTAADesign primers
1851673TAAAGGTTT-TAAAGGTTT-TAAAGGTTT-TAAAGGTTTDesign primers
1925547AGAACGAGC-AGAACGAGC-AGAACGAGC-AGAACGAGCDesign primers
1950054CGGCAGCGCCCCAGCCTAAC-CGGCAGCGCCCCAGCCTAAC-CGGCAGCGCCCCAGCCTAAC-CGGCAGCGCCCCAGCCTAAC-CGGCAGCGCCCCAGCCTAACDesign primers
2047016CCATGATGC-CCATGATGC-CCATGATGC-CCATGATGCDesign primers
2047053CGTGATGCC-CGTGATGCC-CGTGATGCC-CGTGATGCC-CGTGATGCC-CGTGATGCC-CGTGATGCCDesign primers
2179115GATTCAGAACA-GATTCAGAACA-GATTCAGAACADesign primers
2460985GCGCATGAAGGG-GCGCATGAAGGG-GCGCATGAAGGGDesign primers
3041048TTTATTCTTCAGATT-TTTATTCTTCAGATT-TTTATTCTTCAGATTDesign primers
4245500CTTCCGCCGCCT-CTTCCGCCGCCT-CTTCCGCCGCCTDesign primers
5012709CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCA-CTTCADesign primers
5031978TTGTTTTATTTC-TTGTTTTATTTC-TTGTTTTATTTC-TTGTTTTATTTCDesign primers
5222211CCTCTATTCAAC-CCTCTATTCAAC-CCTCTATTCAAC-CCTCTATTCAACDesign primers
5288728AAGAAA-AAGAAA-AAGAAA-AAGAAADesign primers
5663594CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCT-CGGCAGTGATGCTDesign primers
5752191GTAGGTTTCTTTCTT-GTAGGTTTCTTTCTT-GTAGGTTTCTTTCTTDesign primers
5801382TCGGTTC-TCGGTTC-TCGGTTC-TCGGTTCDesign primers
5829192AGCTGG-AGCTGG-AGCTGG-AGCTGGDesign primers
5845389CCTGCACTCAGCT-CCTGCACTCAGCT-CCTGCACTCAGCTDesign primers
5911815ATTTCCTTTTCTG-ATTTCCTTTTCTG-ATTTCCTTTTCTG-ATTTCCTTTTCTGDesign primers
6346920GTTCGGTTG-GTTCGGTTG-GTTCGGTTG-GTTCGGTTGDesign primers
6602236TCTATCGTTGGTTCTCT-TCTATCGTTGGTTCTCT-TCTATCGTTGGTTCTCTDesign primers
6802067CGAGTCAACATTCC-CGAGTCAACATTCC-CGAGTCAACATTCCDesign primers
6859175TCTATGCTG-TCTATGCTG-TCTATGCTGDesign primers
7194899AAGATCAA-AAGATCAA-AAGATCAADesign primers
7378863CAACCCGTT-CAACCCGTT-CAACCCGTTDesign primers
7452057GGGCGCTC-GGGCGCTC-GGGCGCTCDesign primers
7631118TCCGGGTGTTTTGA-TCCGGGTGTTTTGA-TCCGGGTGTTTTGA-TCCGGGTGTTTTGADesign primers
7921612GCTTCGGTT-GCTTCGGTT-GCTTCGGTT-GCTTCGGTT-GCTTCGGTTDesign primers
7921871TCGGTCGCT-TCGGTCGCT-TCGGTCGCTDesign primers
7940748TCCGACAC-TCCGACAC-TCCGACACDesign primers
7958450CCTGCTTC-CCTGCTTC-CCTGCTTCDesign primers
8028912CCCTGA-CCCTGA-CCCTGA-CCCTGADesign primers
8369005CTGCTTTACTC-CTGCTTTACTC-CTGCTTTACTC-CTGCTTTACTCDesign primers

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