Microsatellites /Tandem Repeats database

Genome: Gordonia polyisoprenivorans VH2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
5762GCCAGACCCCGACGG-CCCAGACCCCGACGG-CCCAGACCCCGACGGDesign primers
18645TCCTCGCGTTCGGTG-CCCTCGCGTTCGGTG-CCCTCGCGTTCGGTG-CCCTCGCGTTCGGTGDesign primers
248222TACGGGCTGAACGGAT-CACGGGCTGAACGGAT-CACGGGCTGAACGGATDesign primers
386107CCCAGAACGGTTCGGCCCAAAACGGTTCGGCCCAGAACGGTTCGGDesign primers
590696CCCGCCCCGAACCCT-CCCGCCCCGAACCCT-CCCGTCCCGAACCCTDesign primers
678399GATGACAAGCCGGGGGATGACAAGCCCGGGGACGACAAGCCGGGGDesign primers
697832GGTATGC-GGTATGC-GGTATGC-GGTATGCDesign primers
826718GCCGCAGAGGTGTCGGGCGCAGAGGTGTCGGACGCAGAGGTGTCGDesign primers
969978GACTCCGGTGACCGAGCCTCCGGTGACCGAGCCTCCGGTGACCGADesign primers
1100960CAGCGGCCAAGAAAACAGCGGCCAAGAAGACAGCGGCGAAGAAAADesign primers
1119850TTACGGCGATGGGGG-CTACGGCGATGGGGG-CTACGGCGATGGGGGDesign primers
1139940TCGGT-GCGGT-GCGGT-GCGGT-GCGGT-GCGGT-GCGGT-GCGGTDesign primers
1150951TCGACGATGCCCCAG-TCGACGATGCCCCAG-TCGACGATGCCCCGGDesign primers
1162231TCCAGCGATCACGGAGTCCAGCGGTCACGGAGTCCAGCGGTCACGGAGDesign primers
1190531TCGGCCGCCGCCGAT-ACGGCCGCCGCCGAT-ACGGCCGCCGCCGATDesign primers
1204936CCGCAGAGAAGTCGG-GCGCAGAGAAGTCGG-GCGCAGAGAAGTCGGDesign primers
1246841TCGATGCAATTCCGAGCGCTG-TCGATGCAATTCCGAGCGCTG-TCGGGGCAATTCCGAGCGCTG-TCGGGGCAATTCCGAGCGCTGDesign primers
1250402GGAGCTCGTCGCGGG-GGAGCTCGTCGCGGG-GGAGCTCGTCGCAGGDesign primers
1390597CAGGGCTACGGCCAGCAGGGCTACGGTCAGCAGGGCTACGGCCAGDesign primers
1393289GCAGACACCGACCCG-GCAGACAACGACCCG-GCAGACAACGACCCG-GCAGACAACGACCCGDesign primers
1403710GAGGTTGTCCTCACCGAGCTTGTCCTCACCGAGGTTGTACTCACCDesign primers
1592388TCACG-GCACG-GCACG-GCACG-GCACG-GCACGDesign primers
1650384CCCCAGAACTATTCGGGA-CCCCAGAACTATTCGGGA-CCCCACAACTATTCGGGADesign primers
1848819CGCGAATCTGACCACCGCGAATCCGACCACCGCGAATCCGACCACDesign primers
1934866CCCAGTCCACGTCCACCCAGCCCACGTCCACCCAGCCCACGTCCADesign primers
1975969CACTGTGCCGTATGGCGTGAGAACGCTGTGCCGTATGGCATGAGAACGCTGTGCCGTATGGCGCGAGAADesign primers
2194792AATCATCCCGGACGGAGTCCGCGAAATCGTCCCGGACGGAGTCCGCGAAATCGTCCCGGACGGAGTCCGCCADesign primers
2228190TGACACTGCAGCGCC-CGACACTGCAGCGCC-CGACACTGCAGCGCCDesign primers
2228564GTCGCG-GTCGCG-GTCGCG-GTCGCGDesign primers
2232208TCACCGTTGTTCGTCACCGTTGTTTGTCACCGTTGTTTGDesign primers
2241899CCACACATCGACCACCACACACCGACCACCACACACCGACCADesign primers
2252247CGACAGCGCTCCCGACGTCACCGACAGCGCTCCCGCCGACACCGACAGCGCTCCCGCCGACACDesign primers
2354708GCCCCGACGATAGTCGCCGGATCAGCACCGACGACAGTCGCCGGATCAGCACCGACGATAGTCGCCGGATCAGCACCGACGACAGTCGCCGGATCADesign primers
2411171TTGTCGAGTCTGAGT-TTGTCGAGTCTGAGT-TTGTCGAGTCCGAGTDesign primers
2476461CCTGTGGCACTCCTCTGGCACTCCTGTGGCACGDesign primers
2484748CCCAAGACGCAGAAGCCCAGGACGCAGAAGCCCAGGACGCAGAAGDesign primers
2539122TCCGAGACCCCGGCCCAC-ACCGAGACCCCGGCCCAC-ACCGAGACCCCGGCCCACDesign primers
2556727CTTCCTGCCCACCGTCTTCCTGCCCACCGATTTCCTGCCCACCGTDesign primers
2933338TGGTCCCCGTGCCCC-TGGTCCCCGTGCCCC-TGGTCCCCGTGTCCCDesign primers
2933387CGTCGTGTCCAGGGT-CGTCGTGTCCAGGGT-CGTCGTGTCCGGGGTDesign primers
2962372GCATCGTGAGCTGCGGCAACGTGAGCTGCGGCAACGTGAGCTGCGDesign primers
3067651GTCGGCGGTATCGGGAGCGCTGTCGGCGGTATCAGGAGCGCTGTCGGCGGTGTCAGGAGCGCTDesign primers
3128025CGTGTTGGTCTCGGTGTTCTTGTTGGTCTCGGTGTTCTTGTTGGTCTCGGTGTTDesign primers
3133082ACCGCTCGCTGCGCTCGGTGCCATCCTGCTCGCTGCGCTCGGTGCCATCCCGCTCGCTGCGCTCGGTGCCATCCTGCTCGCTGCGCTCGGTGCCATDesign primers
3169521ACGTAGGTCGTCACTGCACGTTGGTCGTCACTGCACGTCGGTCGTCACTGCDesign primers
3172798CCCGGTGCGCAGCACCGCAGTGGT-TACGGTGCGCAGCACCGCAGTGGT-TACGGTGCGCAGCACCGCAGTGGT-TACGGTGCGCAGCACCGCAGTGGTDesign primers
3217090CCGGAG-CCGGAG-CCGGAG-CCGGAGDesign primers
3269986ACCGTCAGCCGGCAACCCAC-CGCGTCAGCCGGCAACCCAC-CGCGTCAGCCGGCAACCCACDesign primers
3312385GTCGGGCTGGTGGTT-GTCGGACTGGTGGTT-GTCGGACTGGTGGTT-GTCGGACTGGTGGTT-GTCGGACTGGTGGTT-GTCGGACTGGTGGTT-GTCGGACTGGTGGTTDesign primers
3384931CTGTGTCGTACCCCC-GTGTGTCGTACCCCC-GTGTGTCGTACCCCCDesign primers
3389611CGACCTCGTGCCGGC-CGACGTCGTGCCGGC-CGACCTCGTGCCGGC-CGACCTCGTGCCGGC-CGACGTCGTGCCGGCDesign primers
3394933GCCGCCGGGACTCGGGCGCATGAT-CCTGCCGGGACTCGGGCGCATGAT-CCTGCCGGGACTCGGGCGCATGAT-CCTGCCGGGACTCGGGCGCATGAT-CCTGCCGGGACTCGGGCGCATGAT-CCTGCCGGGACTCGGGCGCATGATDesign primers
3451475GCTCGTGGCCTGTTCGAG-CCTCGTGGCCTGTTCGAG-CCTCGTGGCCTGTTCGAGDesign primers
3474952CAAAGAGTGACACCACAGAGAGTGACACCACAGAGAGTGACACCADesign primers
3522629GGCTCGCTGCCAGAAGTCGTCTCGCTGCCAGAAGTCGTCTCGCTGCCAGAAGTCDesign primers
3524965TGCTTGATCTGGCGGCTCCGCCGC-GGCGTGATCTGGCGGCTCCGCCGC-GGCGTGATCTGGCGGCTCCGCCGC-GGCGTGATCTGGCGGCTCCGCCGC-GGCTTGATCTGGCGGCTCCGCCGCDesign primers
3552514GTGTTGTTGTAATCAGTGTTGTTGTTATCAGTGTTGTTGTAATCGDesign primers
3629254ACCGAC-ACCGAC-ACCGAC-ACCGACDesign primers
3707128CCCGCTGCGCCACAA-CCCTCTGCGCCACAA-CCCTCTGCGCCACAA-CCCTCTGCGCCACAADesign primers
3745873TTGTCTGCAGCACAT-CTGTCTGCAGCACAT-CTGTCTGCAGCACATDesign primers
3795228GGCGGTCGGGGGCTGGCCGGTCGGGGGCTGGGCGGTCGGGGGCTGDesign primers
3795464TCCCCG-TCCCCG-TCCCCG-TCCCCG-TCCCCGDesign primers
3925090GCCCCCGTCGGGTGCGGCCCCGTCGGGTGCGGCCCCGTCGGGTGCDesign primers
3943106TTCGAGCTCGGTGGTG-GTCGAGCTCGGTGGTG-GTCGAGCTCGGTGGTGDesign primers
3947615TGCCATGTCATCTAC-TGCCATGTCATCTAC-AGCCATGTCATCTACDesign primers
4123318GCTGGGGCTGCTGCTGACGCTGGGGCTGCGGCTGCTGCTGACGCTGCGGTTGGGGCTGCTGCTGACGCTGCGDesign primers
4132371CCGCTT-CCGCTT-CCGCTT-CCGCTTDesign primers
4143620TCGCCGGCTCCGCCTCAGCCACATCACCGGCTACGCCTCAGCCACATCACCGGCTTCGCCTCAGCCACATCACCGGCTTCGCCTCAGCCACADesign primers
4191329CCGCGAACCCCACCA-CCGCGAACCCCACCA-CCGCGGACCCCACCADesign primers
4282940TCAGATCACGGGCT-TCAGATCACGGGCT-TCAGATCGCGGGCTDesign primers
4317838CGTTGTCGGTCAGAT-CGTTGTCGGTCAGAT-CGCTGTCGGTCAGAT-CGCTGTCGGTCAGATDesign primers
4338801GATTGGGCCGCCGTTGATTGGGCCGCCGTCGACTGGGCCGCCGTTGATTGGGCCGCCGTTDesign primers
4368418TCTGTGTCCCATCGCTCTGGGTCCCATCGCTCTGTGTCCCATCGCTCTGTGTCCCATCGCDesign primers
4439245CGACAG-CGACAG-CGACAG-CGACAGDesign primers
4481378GCTGTC-GCTGTC-GCTGTC-GCTGTCDesign primers
4579015CTCGTCGCTAACGCGTCGCTAACGCGTCGCTAADesign primers
4656834TTGGACTGTTGGCCATACGGCTGCGACTGTTGGCCATACGGCTGCGACTGTTGGCCATACGGCDesign primers
4835434CGTCGCGGTGTCGGT-CGGCGCGGTGTCGGT-CGGCGCGGTGTCGGT-CGGCGCGGTGTCGGT-CGGCGCGGTGTCGGTDesign primers
5211589GATCCTCCGGGTCAGCGCTGATCAAGACCCTCCGGGTCAGCGCTGATCAAGACCCTCCGGGTCAGCGCTGATCCADesign primers
5303179CCGAGTCCACGCCGA-CCGAGTCCACGCCGA-CCGAGTCCACGCTGADesign primers
5490447GGCGCGTTTCGCGCGGATGTGACAGTGCGTTTCGCGCGGATGTGACAGTGCGTTTCGCGCGGATGTGACDesign primers
5502006CGTCCCCGCCCTGGA-TGTCCCCGCCCTGGA-TGTCCCCGCCCTGGA-TGTCCCCGCCCTGGA-TGTCCCCGCCCTGGADesign primers
5585317TCTGATCCAGTGACGATCTGATCGAGTGACGATCTGATCCAGTGACGTDesign primers
5654121GAGCCCGAGTCCGCG-GAGCCCGAGTCCGCG-GAGCCCGAGTCCGGGDesign primers
5664012TCGGTATCAG-GCGGTATCAG-GCGGTATCAGDesign primers
5666556CGCCGTCGTCCTCAGCACCGTCGTCCTCAGCACCGTCGTCCTCAGDesign primers

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