Microsatellites /Tandem Repeats database

Genome: Gordonia polyisoprenivorans VH2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
5763CCAGACCCCGACGGC-CCAGACCCCGACGGC-CCAGACCCCGACGGCDesign primers
18646CCTCGCGTTCGGTGC-CCTCGCGTTCGGTGC-CCTCGCGTTCGGTGC-CCTCGCGTTCGGTGCDesign primers
697832GGTATGC-GGTATGC-GGTATGC-GGTATGCDesign primers
969980CTCCGGTGACCGAGC-CTCCGGTGACCGAGC-CTCCGGTGACCGAGCDesign primers
1119851TACGGCGATGGGGGC-TACGGCGATGGGGGC-TACGGCGATGGGGGCDesign primers
1139941CGGTG-CGGTG-CGGTG-CGGTG-CGGTG-CGGTG-CGGTG-CGGTG-CGGTGDesign primers
1190532CGGCCGCCGCCGATA-CGGCCGCCGCCGATA-CGGCCGCCGCCGATADesign primers
1204937CGCAGAGAAGTCGGG-CGCAGAGAAGTCGGG-CGCAGAGAAGTCGGGDesign primers
1246867GCAATTCCGAGCGCTGTCGGG-GCAATTCCGAGCGCTGTCGGG-GCAATTCCGAGCGCTGTCGGGDesign primers
1250437TCGTCGCAGGGGAAT-TCGTCGCAGGGGAAT-TCGTCGCAGGGGAATDesign primers
1393297CGACCCGGCAGACAA-CGACCCGGCAGACAA-CGACCCGGCAGACAA-CGACCCGGCAGACAADesign primers
1592389CACGG-CACGG-CACGG-CACGG-CACGG-CACGG-CACGGDesign primers
2228191GACACTGCAGCGCCC-GACACTGCAGCGCCC-GACACTGCAGCGCCCDesign primers
2228564GTCGCG-GTCGCG-GTCGCG-GTCGCGDesign primers
2252265CACCGACAGCGCTCCCGCCGA-CACCGACAGCGCTCCCGCCGA-CACCGACAGCGCTCCCGCCGADesign primers
2484753GACGCAGAAGCCCAG-GACGCAGAAGCCCAG-GACGCAGAAGCCCAGDesign primers
2539123CCGAGACCCCGGCCCACA-CCGAGACCCCGGCCCACA-CCGAGACCCCGGCCCACADesign primers
3128027TGTTGGTCTCGGTGTTCT-TGTTGGTCTCGGTGTTCT-TGTTGGTCTCGGTGTTCTDesign primers
3172800CGGTGCGCAGCACCGCAGTGGTTA-CGGTGCGCAGCACCGCAGTGGTTA-CGGTGCGCAGCACCGCAGTGGTTA-CGGTGCGCAGCACCGCAGTGGTTADesign primers
3217090CCGGAG-CCGGAG-CCGGAG-CCGGAGDesign primers
3269988CGTCAGCCGGCAACCCACCG-CGTCAGCCGGCAACCCACCG-CGTCAGCCGGCAACCCACCGDesign primers
3312391CTGGTGGTTGTCGGA-CTGGTGGTTGTCGGA-CTGGTGGTTGTCGGA-CTGGTGGTTGTCGGA-CTGGTGGTTGTCGGA-CTGGTGGTTGTCGGA-CTGGTGGTTGTCGGADesign primers
3384932TGTGTCGTACCCCCG-TGTGTCGTACCCCCG-TGTGTCGTACCCCCGDesign primers
3394936GCCGGGACTCGGGCGCATGATCCT-GCCGGGACTCGGGCGCATGATCCT-GCCGGGACTCGGGCGCATGATCCT-GCCGGGACTCGGGCGCATGATCCT-GCCGGGACTCGGGCGCATGATCCT-GCCGGGACTCGGGCGCATGATCCTDesign primers
3451476CTCGTGGCCTGTTCGAGC-CTCGTGGCCTGTTCGAGC-CTCGTGGCCTGTTCGAGCDesign primers
3474955AGAGTGACACCACAG-AGAGTGACACCACAG-AGAGTGACACCACAGDesign primers
3522631CTCGCTGCCAGAAGTCGT-CTCGCTGCCAGAAGTCGT-CTCGCTGCCAGAAGTCGTDesign primers
3524969TGATCTGGCGGCTCCGCCGCGGCG-TGATCTGGCGGCTCCGCCGCGGCG-TGATCTGGCGGCTCCGCCGCGGCGDesign primers
3629254ACCGAC-ACCGAC-ACCGAC-ACCGACDesign primers
3707132CTGCGCCACAACCCT-CTGCGCCACAACCCT-CTGCGCCACAACCCT-CTGCGCCACAACCCTDesign primers
3745874TGTCTGCAGCACATC-TGTCTGCAGCACATC-TGTCTGCAGCACATCDesign primers
3795464TCCCCG-TCCCCG-TCCCCG-TCCCCG-TCCCCGDesign primers
3925092CCCCGTCGGGTGCGG-CCCCGTCGGGTGCGG-CCCCGTCGGGTGCGGDesign primers
4132371CCGCTT-CCGCTT-CCGCTT-CCGCTTDesign primers
4317856TGTCGGTCAGATCGC-TGTCGGTCAGATCGC-TGTCGGTCAGATCGCDesign primers
4439245CGACAG-CGACAG-CGACAG-CGACAGDesign primers
4481378GCTGTC-GCTGTC-GCTGTC-GCTGTCDesign primers
4579017CGTCGCTAACG-CGTCGCTAACG-CGTCGCTAACGDesign primers
4656837GACTGTTGGCCATACGGCTGC-GACTGTTGGCCATACGGCTGC-GACTGTTGGCCATACGGCTGCDesign primers
4835437CGCGGTGTCGGTCGG-CGCGGTGTCGGTCGG-CGCGGTGTCGGTCGG-CGCGGTGTCGGTCGG-CGCGGTGTCGGTCGGDesign primers
5490450GCGTTTCGCGCGGATGTGACAGT-GCGTTTCGCGCGGATGTGACAGT-GCGTTTCGCGCGGATGTGACAGTDesign primers
5502007GTCCCCGCCCTGGAT-GTCCCCGCCCTGGAT-GTCCCCGCCCTGGAT-GTCCCCGCCCTGGAT-GTCCCCGCCCTGGATDesign primers
5664013CGGTATCAGG-CGGTATCAGG-CGGTATCAGGDesign primers
5666558CCGTCGTCCTCAGCA-CCGTCGTCCTCAGCA-CCGTCGTCCTCAGCADesign primers

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