Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Serratia symbiotica str. 'Cinara cedri'

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
8399	TTAGTGAT-TTAGTGAT-TTAGCGAT	Design primers
11245	TATATAGAT-ATTACAGAT-ATTACAGAT-ATTACAGAT-ATTACAGAT-ATTACAGAT	Design primers
25078	AAGATATA-TAGATATA-TAGATATA	Design primers
49574	ACTATATA-TCTATATA-TCTATATA-TCTATATA-TCTATATA	Design primers
56806	TAATATTATTAATATAATTAATATTAT	Design primers
59878	TTTAGTAC-ATTAGTAC-ATTAGTAC	Design primers
60321	ATCG-AATT-AATT-TATT-AATT-TATT-AATT-TATT-AATT-TATT-AATT-TATT-AATT-TATT-AATT-TATT-AATT-TATT	Design primers
60397	TATTAATTTATTAATGTATTTATT	Design primers
75630	AAATATAATTATCAATATAAATAA	Design primers
78222	CGCACGACC-AGCACGACC-AGCACGACC	Design primers
104732	ATATA-ATAAA-ATATA-ATATT-ATTTA	Design primers
130244	TTTGTTAATTTATTAATTTGTTTA	Design primers
143630	TAGTTGTAGATGTAGTTATAGTTA	Design primers
149954	AATTTTTTAATTTCTTAGTTTTTT	Design primers
150662	TATTAAT-ATATATT-ATATATT-ATATATT-ATATATT-ATATATT-ATATATT-ATATATT-ATATATT	Design primers
157495	TCATGCCAC-CCATGCCAC-CCATGCCAC-CCATGCCAC	Design primers
169959	TATTG-CTTTG-TTTTT-CTTTG-CTTTG-CTTTG	Design primers
175280	ATAGTTAGATGGTTAGATAGTTAG	Design primers
177330	TATTGATTAATAAATTATTAATTAATATAATATAGATTATTTAAT	Design primers
179310	GTGTGCTAATATAGGTAGGCTAATATAGGTAGGCTAATATAG	Design primers
200810	ATCTAGAGGTCTAGAGATCTAGAGATCTAGAT	Design primers
211811	ATATTTTTCATATCTTTCATATATTTC	Design primers
212042	AT-GT-TT-TT-AT-TT-TT-TT-AT-GT-TT-TT-AT-AT-TT-TT	Design primers
223537	AT-AT-AT-TT-AT-TT-AT-AT-TG-AT-AT-CT-AT-AT-AT	Design primers
224191	AGTTACGCT-AGTTACGCT-AGTTACGTT	Design primers
232518	TATTATAGGTTTTATAGGTTTTATAGG	Design primers
253431	ATTTATAATATTTATTATATTTGTAAT	Design primers
256772	CAAGATACCC-TTAGATACCC-TTAGATACCC-TTAGATACCC	Design primers
259626	TAGCAG-TATGAG-TATGAG-TATGAG-TATGAG-TATGAG-TATGAG-TATGAG	Design primers
270178	TTTGACTCT-ATTGACTCT-ATTGACTCT	Design primers
301880	AATTATAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG-TCTATTAG	Design primers
318344	ATAGTATA-TTAGTATA-TTAGTATA-TTAGTATA-TTAGTATA	Design primers
324525	GTTGTAATAGTTT-CCTGTAATAGTTT-CCTGTAATAGTTT	Design primers
325607	AATTTAATTTTAAAGTTAATTTTA	Design primers
329587	TTATTAAAAATTTATAAAAATTTATAAAAA	Design primers
332775	TAGTTTAG-CAGTTTAG-CAGTTTAG	Design primers
343610	TATAAATCAAATTATAAATAAGATTATAAATTAAAT	Design primers
343942	TTAGCTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC-ATTATTAC	Design primers
346828	ATTATCTTATATAATATTATAATATATTTTATGATATTATTTTAT	Design primers
352014	ATGAAGTTAA-TTTAGTTTAA-TTGAGTTTAA-TTGAGTTTAA-TTGAGTTTAA-TTGAGTTTAA	Design primers
355744	ATAAACAGAAACATAAATATAAAT	Design primers
372875	GTTAAAAATTTAAAATTAAAAATTAAAAATTAAAAATTAAAA	Design primers
372939	AATTAAAAAATTAAA-AATTAAAAAATTAAA-AATTAAAAATTATAA	Design primers
383042	AATACATA-AATATATA-AATATATA-AATATATA-AATATATA	Design primers
388641	TAGTTACTC-GAGTTACTC-GAGTTACTC	Design primers
388677	GAGTTGATC-TAGTTGATC-TAGTTGATC	Design primers
396660	TTATATTATTTATCTTATTTATTTTAT	Design primers
430370	ATTTGTAATTGTTTTTGTATTTGA	Design primers
432757	TATTTTATTGATTTTTATTGTGTTTTATTT	Design primers
439841	TAGCAAGA-TAGTAAGA-TAGTAAGA-TAGTAAGA	Design primers
485640	TTTTTTATTTTGTTTTTCTTGTTTTCTTTT	Design primers
487274	ATCTTCTT-AGCTTCTT-AGCTTCTT-AGCTTCTT-AGCTTCTT	Design primers
497981	ACCTAT-GTCTAT-ATCTAT-ATCTAT-ATCTAT-ATCTAT	Design primers
507942	TATATGT-AATATGT-AATATGT-AATATGT-AATATGT	Design primers
509820	TACATTAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA-TATTTAAGA	Design primers
516298	TATTATA-ATTTATA-ATTTATA-ATTTATA-ATTTATA-ATTTATA	Design primers
532879	ATAAATTAATATGCATTAATATAAATTAAC	Design primers
567709	ATTATATTAGAATATAATATATTCT	Design primers
567780	ATATTGTC-TTATTGTC-TTATTGTC-TTATTGTC	Design primers
570305	TATTAGTTTATTAGTCTATGAGTT	Design primers
584664	CAATGTGT-ACTTGTGT-ACTTGTGT-ACTTGTGT-ACTTGTGT-ACTTGTGT	Design primers
586229	AATGTTATAACGTTATAATGTTCT	Design primers
596331	AATATA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA-TGCTTA	Design primers
623038	TTTTAATTAT-TTTTAATTAT-ATGTAATTAT	Design primers
623965	TTTTAAATCTTAAAATTTAAATCTTAAA	Design primers
627244	TATTTA-TATTTA-TTTTTA-TATTTC	Design primers
638446	CATAT-CTTAT-CTTAT-CTTAT-CTTAT	Design primers
650053	TGTGCAG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG-TATATTG	Design primers
651927	AGATG-TATTA-TTTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG	Design primers
653840	AATTATAAAAGTATAAAATAATAA	Design primers
672782	ATAATAT-ATTATAT-ATTATAT-ATTATAT-ATTATAT	Design primers
692326	TATTTATAATGATTTATGATTTTTTATCAT	Design primers
692729	ATA-ATA-ATA-GTA-ATA-TTA-ATA-GTA	Design primers
695618	TAATAAT-TTTATAT-TTTATAT-TTTATAT-TTTATAT-TTTATAT-TTTATAT-TTTATAT-TTTATAT	Design primers
705350	AATTA-AATTA-TATTA-AATAA-AAATA	Design primers
705727	AT-AT-TT-TT-AT-AT-TT-TT-AT-AT-AT-TT	Design primers
705897	TTTTAC-TATATC-TATATC-TATATC-TATATC-TATATC-TATATC-TATATC-TATATC	Design primers
726806	AGTGTTTAG-CTAGTTTAG-CTAGTTTAG-CTAGTTTAG-CTAGTTTAG-CTAGTTTAG	Design primers
762086	TAATATAT-TAGTTAAT-TAGTTAAT-TAGTTAAT-TAGTTAAT-TAGTTAAT	Design primers
762958	ACTATT-TATATT-AATATT-AATATT-AATATT-AATATT	Design primers
763553	ATATATT-AATTATT-AATTATT-AATTATT-AATTATT-AATTATT	Design primers
799096	CATTATAG-TTATATAG-TTATATAG-TTATATAG-TTATATAG-TTATATAG	Design primers
811531	GTAAATATGTAAATTTGTAAATTT	Design primers
822539	GATTGAAATTGATGGAACTTGATGGAAACT	Design primers
832579	TA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA	Design primers
852200	TATATATAAATATATTTATATATA	Design primers
858391	AATA-ATTA-AATC-ATTA-ATTA-ATTA	Design primers
910931	TACCTA-TAACTA-TAACTA-TAACTA	Design primers
921798	ATCAAT-AAGAAT-AAGAAT-AAGAAT-AAGAAT-AAGAAT	Design primers
921963	TATATTTGTATTTATGTTTATATT	Design primers
932602	TTAAAATAC-ATAAAATAC-ATAAAATAC	Design primers
934442	ATATAATATATAAACTATAATATATTAT	Design primers
934505	AT-AT-AT-AT-AA-AT-GT-AT-AT-AT-AA-AT	Design primers
935650	TT-AA-AA-TA-TT-AA-AA-CA-TA-AA-AA-TA	Design primers
938239	TAATAAAT-AATAAAGT-AATAAAGT-AATAAAGT-AATAAAGT-AATAAAGT-AATAAAGT-AATAAAGT-AATAAAGT	Design primers
938907	TATACAAAATATACATAATATACATAA	Design primers
969538	ATCAATATTAATATCAATATCAAT	Design primers
976797	AATT-AAAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG-ATAG	Design primers
987071	AAAAATTTTAATAAAATTTAATAAAATTTA	Design primers
1009079	AAATACT-CTATACT-CTATACT-CTATACT-ATATACT-CTATACT	Design primers
1020087	GCAACAT-ATAACAT-ATAACAT-ATAACAT-ATAACAT-ATAACAT	Design primers
1030682	AAATTATCTAAAATAATCTAAATTAATCTA	Design primers
1030755	CATAAAAA-TATAAAAA-TATAAAAA	Design primers
1073149	TAATTAGTTAATTAATTAATTGGT	Design primers
1073871	ATTACAC-TATCAAC-TATCAAC-TATCAAC-TATCAAC-TATCAAC-TATCAAC-TATCAAC-TATCAAC	Design primers
1075104	GTATGC-CTATGC-CTATGC-CTATGC-CTATGC	Design primers
1078913	ATACATAATATACATTATATACATCAT	Design primers
1092268	AAAATATATATCACTAAAATATATATAATAAAAATATATAGCTAT	Design primers
1098807	TAAGAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT	Design primers
1104606	TATCTTGTATATATTGTATATCTTGTA	Design primers
1116919	ATAAATC-AATAATC-AATAATC-AATAATC-AATAATC-AATAATC	Design primers
1118255	TTAATAAAATATACTAAAATATACTAAAAT	Design primers
1119549	TTAATATTAAAATTTATATTTATA	Design primers
1123538	AATAT-TCTAT-AATAT-AATAT-AAAAT-TATAT	Design primers
1130090	TTAAA-TTAAA-ATAAA-TTAAA-ATAAA	Design primers
1137534	AAATAATATATAATAAAATTATATA	Design primers
1141907	GAGCACA-GAGCTCA-GAGCTCA-GAGCTCA	Design primers
1142886	AAGTAAAATAATTAAAATAATTAAAAT	Design primers
1144395	ATAAAAGTAAAAATAAACATCAAA	Design primers
1149086	ATAACAAT-ATAATAAT-ATAATAAT-ATAATAAT	Design primers
1158750	AGTA-AATA-AATA-AATA-AATA-AATA	Design primers
1168614	ACAATACTA-CCAATACTA-CCAATACTA-CCAATACTA-CCAATACTA	Design primers
1173887	ATTATTCAAA-TATATTCAAA-TATATTCAAA	Design primers
1185552	ATTAATGTTAATATTAACCTTAAT	Design primers
1187935	TATATATT-GGATTATT-GGATTATT-GGATTATT-GGATTATT-GGATTATT-GGATTATT-GGATTATT-GGATTATT	Design primers
1190101	ATTAATTTAATTTAAATAAAATTAA	Design primers
1190246	ACTA-AATA-AATA-AATA-AATA-AATA	Design primers
1201525	TAAGATAGCTAAGATAACTAAGATAGC	Design primers
1228624	ATATA-TTATA-TTATA-TTATA-TTATA	Design primers
1230471	TAATATTTATATTAATAATATTAT	Design primers
1237967	ATAAAAATAATAAAAAAAATAAAT	Design primers
1239676	CCGATCAATAAAAGGATCAATAAAAAGATCAATAAA	Design primers
1242720	TAGATTTAAATTAAAATTAAATTAGATTAAACT	Design primers
1247779	TTAATA-TCAATA-TCAATA-TCAATA-TAAATA	Design primers
1249888	TGGACTAG-TTAGATAG-TTAGATAG-TTAGATAG-TTAGATAG-TTAGATAG-TTAGATAG-TTAGATAG-TTAGATAG	Design primers
1258673	CTAGT-ATAAT-ATAAT-ATAAT-ATAAT-ATAAT	Design primers
1270902	GCGCTAAGTTGCTAAGTTGCTAAATTGCTAAGTCGCTAAGTCGCTAAA	Design primers
1281634	AATTT-TATTT-TATTT-TATTT-CATTT-AATTT	Design primers
1302808	ATTATATAATATAATATAATATAATATTATATTAA	Design primers
1304909	ATTAATT-AATAATT-ATAAATT-ATAAATT-ATAAATT-ATAAATT-ATAAATT-ATAAATT	Design primers
1305001	ATATA-TAAAA-TAAAA-TAAAA-TAAAA-TAAAA-TAAAA-TAAAA-TAAAA	Design primers
1315179	AATAATAAAAGAATAAAATAATAC	Design primers
1323638	CGCTGA-TACTGA-TACTGA-TACTGA-TACTGA-TACTGA	Design primers
1331700	ATCACTAATGATCCCTAATGACCTCTAATG	Design primers
1337676	CTAAAAT-ATAAAAT-ATAAAAT-ATAAAAT-ATAAAAT	Design primers
1337712	TGAAATA-TGAAATA-TGAAATA-TGAAATA-TGAAATA-TGAAATA	Design primers
1338062	ATCATTAGATATCATAAGAGATCATTGAAT	Design primers
1340942	TATAAAAAATTAAATAAAATAATAAAAACT	Design primers
1364840	TAATA-AAATA-AAATA-AAATA-AAATA	Design primers
1366734	TT-TT-AT-AT-AT-TT-AT-AT-AT-TT-AT-AT	Design primers
1368904	TACACCACTTATACCACTTATACCACTTACACTACT	Design primers
1375532	ACTAACT-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA	Design primers
1378008	ATAAAAATATAGAAAATTATAAAATAATAT	Design primers
1379429	ATATTCGTA-ATATACGTA-ATATACGTA-ATATACGTA	Design primers
1380019	TTTAATATTTTGATATTTTGATAT	Design primers
1380722	AATTTTAAG-TATTTTGAG-TATTTTTAG-TATTTTTAG-TATTTTTAG-TATTTTTAG	Design primers
1408519	ACACAATA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA-ATAGATAA	Design primers
1428091	ACTAATATACTACTATACTAATAG	Design primers
1435135	AATCATC-TATTATC-TATTATC-TATTATC-TATTATC-TATTATC-TATTATC-TATTATC	Design primers
1437720	ACTAACAT-AATAAAAT-ATTAAAAT-ATTAAAAT-ATTAAAAT-ATTAAAAT-ATTAAAAT-AATAAAAT	Design primers
1450096	ATAATAATATTATTAATAATTATA	Design primers
1459269	TAATACT-TAATACT-TAATATT-TAATACT	Design primers
1467030	CAT-CAT-AAT-CAT-AAT-CAT-AAT-CAT	Design primers
1468320	TATGTAT-TATGTAT-TATGTAT-TATGTAG	Design primers
1469185	CCAGCAA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA-ATAGATA	Design primers
1473793	TATTAGC-ATTTAGC-ATTTAGC-ATTTAGC-ATTTAGC-ATTTAGC	Design primers
1483068	TATGTGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA	Design primers
1495776	TCTTATTATCTATACTAATTATCTATACTAATTATCTAT	Design primers
1524137	AATATATTATTATATAATATAATAC	Design primers
1532312	ACAG-ATAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA	Design primers
1534164	TATAAAAATAAATATAAGTATAAA	Design primers
1542369	TAAGATA-TAAGATA-TAAGATA-TTAGATA-TTAGATA-TTAGATA-TTAGATA	Design primers
1552858	TTTAA-TTTAT-TATAA-TATAA-TCTAA	Design primers
1553850	ATAATATACTATAGTAAAATATTAT	Design primers
1562349	ATAAA-ATACA-ATACA-ATACA-ATACA	Design primers
1565459	TAGTTATCTGGTTATCTAGTTATC	Design primers
1566973	ATATACTTATATATCCCTATCTAAACTTAT	Design primers
1568555	TA-TA-CT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT	Design primers
1568652	TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA-TAAGTA	Design primers
1576945	CTCTAAT-ATCAAAT-ATCAAAT-ATCAAAT-ATCAAAT-ATCAAAT	Design primers
1578692	CAAATAGATATACAATAGATATTAAATAGATAA	Design primers
1591835	AG-AT-AT-AA-AT-AT-AG-AT-AT-AA-AT-AT	Design primers
1596308	AATAATTTAAAATAATTATAAATATTTTGA	Design primers
1612030	CCATAAAAT-ACATAAAAT-ACATAAAAT	Design primers
1619829	CGATACAC-ATCTACAC-ATCTACAC-ATCTACAC-ATCTACAC-ATCTACAC	Design primers
1622022	AA-GA-AA-AA-TA-CA-AA-TA-CA-AA-TA-CA-AA-TA-CA-AA-TA-CA-AA-TA-CA-AA-TA-CA	Design primers
1622259	TAAATAA-CAAACAA-TAAATAA-TAAATAA-TAAATAA-TAAATAA	Design primers
1632837	TATAAGATATAAGCGATAAGATATAAGA	Design primers
1637550	AAAT-AATT-AACT-AATT-AATT-AATT	Design primers
1641035	AA-AA-TA-TA-TA-AA-TA-TA-AA-AA-AA-TA	Design primers
1670310	TAGCTATTA-TAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA-CAGATATTA	Design primers
1677027	AATTTAATTATACGTTAATTATACGTTAATTAT	Design primers
1681293	TATTAATATTACTGTTAATTTTAA	Design primers
1689759	TCTTAG-TCTTAG-TTTTAG-TTTTAG-TTTTAG-TTTTAG	Design primers
1708239	ATTATATAAATTACATAAATTATATAA	Design primers
1712823	TATAAAAT-AATAAAAT-AATAAAAT-AATAAAAT	Design primers
1728713	AACTATTATA-TTCTATTATA-TTCTATTATA	Design primers
1734058	TAATATTATTATTTATATTGATAT	Design primers
1746103	TTAATAGTTTTCTTGTTTTCTTGTTTTCTTGTTTTCTTGTTTTTTTGTTTTCTTGTTTTCTTGTTTTCTTGTTTTCTTGTTTTCTTGTTTTCTTGA	Design primers
1747722	AAATATTAGCAATATTAGAAATATTAG	Design primers
1747838	TAAAATGTTATAAAGTATTATAAAATATTT	Design primers
1749907	ATAAAATATAATACAATTAAATAAA	Design primers
1750449	AATATTA-AATATTA-AGTATTA-AGTATTA-AATATTA	Design primers
1758990	ATATTTATACTTATGTTTATTTTT	Design primers
1759302	TT-AA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA	Design primers
1759351	ATATTATAA-ATATTATAA-ATATTATAA-ATATTATAA-ATATTATAA-ATATTATAA-ATATAATAA-ATATAATAA-ATATAATAA-ATATTATAA-ATATTATAA-ATATTATAA-ATATAATAA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

8399

TTAGTGAT-TTAGTGAT-TTAGCGAT