Microsatellites /Tandem Repeats database

Genome: Vibrio sp. EJY3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
81363GCTCTTTATTGCGCTTTTTTGCTCATCATTDesign primers
107221ATGCTAAAGACGCTAAAGACGCTAAAGDesign primers
346982TGATGGCGGTGATGGTGGTGACGGCGGDesign primers
444367TTGTTGATGTCCTTCGGGAGACTGACGTTGAGGTCCTTCGGGAAACTGACGTTGACGTCCTTCGGGAGACTGDesign primers
650818TTTTTTTTATTTTTATTTTTTATTTDesign primers
1197980TCTGAA-CCTGAA-CCTGAA-CCTGAADesign primers
1269937TATTTTTTCATATCTGTTCATGTTTTTTAADesign primers
1365315ATTTTGTGGTTTTTTGTTGTATTTTTTGATDesign primers
1399327AGCAGAAGAAGAAGCAAAAGCAGADesign primers
1485257GAGCTT-GTACTA-GAACTA-GAACTA-GAACTA-GAACTA-GAACTA-GAACTA-GAACTADesign primers
1919622AACAGCAGCAGCGACAGCAACAGCDesign primers
2067478TTAAGTAATTGAGTAATTAAGTAADesign primers
2092036AACCTT-AATCTT-AATCTT-AATCTTDesign primers
2117839AAAATAATAATAAAAAGAGAAATADesign primers
2133613TATATTTATAATTATCTTTATTTTTATAATDesign primers
2420578GGCAGGGGCTGGTGCAGGAGCAGGDesign primers
2466445GCTACTGAAACCTTGGCTCCTGAAACCCTAGCTCCTGAAACTCTGDesign primers
2535035AGCTTATGCTCTAATTAGCTTATGCTCCAATTGGCTTATACTCAAATTDesign primers
2554274CAATTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTCDesign primers
2822928CGTTTCGCTTTTTCTTCAGCTTCACGTTTCGCTTTTTCTTCAGCGTCACGTTTTGCAGCTTCTTCAGCTTCACGTTTTGCAGCTTCTTCAGCTTCADesign primers
2823027TTTGCGGCTTCTTCAGCTGCGCGTTTTGCTGCTTCTTCTGCTTCACGTTTTGCCGCTTCTTCAGCGTCACGTDesign primers
2903265AGCTGGAGCTGCTGCTGGAGCTGCDesign primers
2915224TCAATAC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTCDesign primers
2985435AGAGCAAGACCAACAGCAAGACCADesign primers
3243513CCGCCCATACCACCCATACCGCCCATGCCGCCCATADesign primers
3354874GGC-TCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCT-TCT-GCTDesign primers

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