Microsatellites /Tandem Repeats database

Genome: Flavobacterium columnare ATCC 49512

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
13023ATAATTC-AAAATTC-AAAATTC-AAAATTCDesign primers
38000TTTTTTTTATTTTTATCTTTTCTTTDesign primers
62993AAAATTTCAGATAATTTCAAAGAAGTTCAGDesign primers
77813TCTTCTTCGTCTTTTTCTTCGTCTDesign primers
205206AAAAATCGATTAAAATTCGTTTATAAATCGAGTDesign primers
248114TATTTATTATAATTTCTTATTAGTTTTTATDesign primers
249596TTTATTTTGATTCAATTTGATTTTTATTGADesign primers
251897AAAGTTTT-AAAGTTTC-AAAGTTTC-AAAGTTTC-AAAGTTTC-AAAGTTTTDesign primers
252002TTACTTA-TTACTAT-TCACTCT-TTACTCT-TTACTCT-TTACTCT-TTACTCT-TTACTCT-TTACTCT-TTACTCT-TTACTCT-TTACTCTDesign primers
252097TCTTCACT-TCTTCACT-TCTTCAATDesign primers
273009GAACAGGAATAGTAACAGCAACAGDesign primers
278103CAAGAAAAAAAGAAAACAATAAAADesign primers
339467AAAGTTAAAATTACAGTTAAAATTDesign primers
421026TTTAGATTTTTTTAGATCTATTTATTTTTTDesign primers
511823AAAAACTAACAACTAATAACTAATAACTDesign primers
561748TTTTTTTTGTTTTTCTTCTTTTTTTDesign primers
620455ATCTTCATCCTCATATTCTTCTTCDesign primers
645955TTT-ATT-TAT-TAT-TAT-TTC-TTT-TTT-TTT-CTTDesign primers
670551TGTTGTGT-TGTTGTAT-TGTTGTAT-TGTTGTTTDesign primers
696555TCAAACAA-TCAAACAA-TCAAAAAADesign primers
724239TTCTAATTGTGCTAATTGTGCTAATTGDesign primers
769434GTTAACAATAATCAATAAACAATAATCAATAAACAATAATCADesign primers
793352AATCCGA-AATCCGA-AATCCAA-AATCCAADesign primers
862733AAAATTC-TAAATTC-TAGATTC-TAAATTC-TAGATTC-TAAATTCDesign primers
875491CACAACAC-AACAACAC-AACAACACDesign primers
890957CTACTTCTGCTTCTATTTCTACTTDesign primers
896976TTCAATGTCAATGTTCAATTTTAATGCCAATATTCAATTTCAATGTCAATATTCAATDesign primers
902136TTTTGGA-TTTTAGA-TTTTAGA-TTTTAGADesign primers
907489TTTACCACATTTTACCACAAATTACCACTTDesign primers
912842GAATTTTAGAATTTCAGAATTTAADesign primers
1026533ATTATTTGAATTTTC-TGAATTTGAATTTTC-TGAATTTGAATTTTCDesign primers
1052632AGTTTAAAAGTTTAGAGGTTTAAAAGTTTAAADesign primers
1102137AGAAGT-AGAAGT-AGGAGT-AGAAGADesign primers
1156025AAAAAAAGTAAAAAAAATAAGAAAAAAGTTDesign primers
1238521GAGAGAATAGATAAGAGAGGATAGAGAAGAGAGAAGAGAGAADesign primers
1275667GTTTCAATCTTT-CCTTCAATCTTT-CCTTCAATCTTT-CCTTCAATCTTTDesign primers
1278584TTTCCTTCAATTTTTCCTTTTATTTCTCCTTCAATTDesign primers
1292040TTTCAATCTTTC-CTTCAATCTTTC-CTTCAATCTTCCDesign primers
1309082TGTTTGATTGTTTGAATGTTTAATDesign primers
1319356AAAAACCTAAAACACCTAAAGAACCTADesign primers
1452690TTTTCTATTTTTTCCATTTTTGCTATTDesign primers
1484128TTAAAAACTAAAAAACTAAAAAACDesign primers
1502294AA-AA-AC-AA-AA-AC-AC-AA-AA-AT-AC-AADesign primers
1508225TAATATTAATAGAAATATTAATAGDesign primers
1635361AATTTTAATAAAAATTTGATAAAATTTTAAGAADesign primers
1706257AATTTTTTTTTGTTTTTTTTTATCTTTTTTDesign primers
1752857GAAAAACAAAAAGAAGAAGAAAAADesign primers
1810489ATTTTTTTAAAATTTATTTAGATTTATTTTAAADesign primers
1850636GTAAAAGTAAACATAAAAGTAGAADesign primers
1902857TGGGTATTATGGGCTATTATTTGTTATTATDesign primers
1915494ATTGCT-TTTGCT-TTTGCT-TTTGCTDesign primers
1968899TTTTTTTTATTTTTATTTTTTTTCTDesign primers
2003124AGAACCATAACCAGCACCAGATCCDesign primers
2047099AATTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTAC-TCTTTACTTTTTACDesign primers
2047324CTTTACT-CTTTACT-TTTTACT-CTTTACT-TTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-TTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-TTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACT-CTTTACTDesign primers
2145786TAGTAAA-TAGTAAA-AAGTAAA-TAGTGAA-AAGTAAADesign primers
2277737TTTTTTCTTGTTGTTTGTTGTTTTTTCGTCDesign primers
2296106GAAAAACAAAAAGAAGAAGAAATADesign primers
2363410TCCTTTTGCTCCTTTTTCTGCTTTTGCDesign primers
2387522AAAAAATAAAAAAAGTAAAAAAGAADesign primers
2450630AA-AA-AA-AA-TA-AA-AA-AT-AA-AA-AA-GA-AA-AA-TADesign primers
2450909TTCTTTTTTTATTTTTTTCTTTTCDesign primers
2460894TATTTTTATCTTTATTTCTATTTGDesign primers
2469804AA-AT-TT-TT-TT-AA-AC-TT-TT-TT-TT-AT-TT-TT-TTDesign primers
2471406TAAATTATAAATCATAAATTTTGAATTADesign primers
2482720TCTAAACTAATATAATCTGATTTAATCAAADesign primers
2488206TTTAAAACTTTTAAACTTTTAAACDesign primers
2493072TT-TT-TT-AT-TT-TT-TT-CT-TT-AT-TT-TT-TDesign primers
2599652TTATTTAATTTTATATTCTTTTATADesign primers
2603546TTTTTCTTTTACCTTTTCTTGTTCDesign primers
2605233TCTTCTTTCTTCCACTTTCTCCTTCTTTTTDesign primers
2617536TTTAAAGTTTGAAGTTTGAAGTTTAAAADesign primers
2617566TTAAAAG-TTTCAAG-TTTCAAG-TTTCAAG-TTTCAAG-TTTCAAGDesign primers
2617628TTCACTTTTCACTCTTCGCTTTTCACTADesign primers
2619898AAAAAAAACATAAAAAAAAAATAAADesign primers
2634574TTAATAAATCTAAATAAATATGAATAAGTCDesign primers
2638473AAAAAAAGAAAAAAAAATAATAAAADesign primers
2695198TCTTCTTCTACTTCTTCCTCCTCTDesign primers
2836546AGTT-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
2858903AGTCAAA-AGTCAAA-AGTCGAA-TGTCAAADesign primers
2858986GACTTTCGGCTTTCGACTTTCGACTTTCDesign primers
2868998AGAAGAAGAAGCAGAAAAAAAAGADesign primers
2903507AGAAGAAGAGGAAGAAAAAGAAGCTGAAGAAGAAAADesign primers
2941873ATGGAT-ACGGAT-ACGGAT-ACGGATDesign primers
2979955TTTGTTTTCTTATGTCTTGTTCTGTDesign primers
3014715AATTTAAAATTCAAAATTTAAAATTCAAAATTTAADesign primers

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