Microsatellites /Tandem Repeats database

Genome: Rickettsia japonica YH

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
112145CGGTTGTTGAATCAGATTGCTCTGACTTTGAATCAGATTGCTCTGACTTTGAATCAGATTGCTDesign primers
202675TTTTTTTATTATTTTTTCTTATTTTDesign primers
256593TAAGATATTAAGAAGATAATAAAAAAATATTAADesign primers
357890AGAAGAGATGATAAGAGACGACAAGDesign primers
500402TTTTTTTCTTTTCTTTTTGTTTTATDesign primers
569580TAGTATTACTATTAGTACTAGTAADesign primers
658243AA-AA-GA-AA-TA-GA-AG-AA-GA-AA-AA-GA-TA-AA-GADesign primers
701862ATAAAAGTAAAAATAGAAATTAAADesign primers
739877AATTTTAATTTAAATATTAATTTADesign primers
769999TTAAAGAAGCAAATCTAAAACAAGCGAATCTAAAAGCAGCAAATCDesign primers
828175TTTATTTGATTTTGTTTTACTTGATDesign primers
1138874ATATTTAAAATATTTAGAATATATAAADesign primers
1147412ATTGCTTCGTCAATTACTTCGTAATTTGCTTCGCCADesign primers
1203079TGTATTAGACTT-TATATGAGACTT-TATATGAGACTT-TATATGAGACTTDesign primers
1236909TTATAGAATTTTAGAATTATAGAADesign primers

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