Microsatellites /Tandem Repeats database

Genome: Oscillibacter valericigenes Sjm18-20

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
29433AGGCCGTGGCCGCGGCCGTGGCCGDesign primers
61725ACAAGGCGGCCGCCGACAAGGCCGCCGCGGAAAAAGCCGCCGCCGDesign primers
166763GGTTTTTCGGGTTTTACGGGTTGTTCGDesign primers
271905AAGGAT-GAGGAT-GAGGAT-GAGGATDesign primers
947003TGGTGGTGGTTGTGGTGCTGCTGGDesign primers
960516AGAGCGGCGAAAAACGGCGAAGAGCGGCTGDesign primers
983540GGAGGCGGAAGCGGAGCCGGAGGGDesign primers
987037CTGGAAGACGCGGAGGAACCGGAAGACGCGGAAGAGCCGGAGGACGCGGAAGAADesign primers
1025074CTGTTGCCGCTCCCGCTGCTGCCGCTGCTGCCGCTCCCGCTCCCGDesign primers
1044913CTTCTTCCGCTGCCGCTTCCTCTTCCGCTGCTGCTTCTACCTCCGCTGCGGCTTDesign primers
1196680GGGACCAATGGGGCCCAAAGGTGACCAAGGDesign primers
1223525GCAGTACTAGCA-GCAGTTCCAGCA-GCAGTTCCAGCA-GCAGTTCCAGCADesign primers
1223576AGGTTCCGAATCCGC-CTGATCCGAATCCGC-CTGATCCGAATCCGC-CTGATCCGAATCCGC-CTGATCCGAATCCGCDesign primers
1238751CCGGAACCGGACGCGGAACCGGAGDesign primers
1238824CCAGTG-CAAGTG-CAAGTG-CAAGTGDesign primers
1459737CGTTCACGGTGCAGTTGTTTACGGTACAGTCTTTCACCGTGGAGTDesign primers
1492563GAAAAACTTCGGAAAAGCTTTGGAAAAGCTTCGDesign primers
1553391CTTCCTCTTCTTCTTCCGCTTCCGDesign primers
1710361GGGAGCAGGCACAGGAGCGGGCACGGGAGCAGGTACDesign primers
1710428GGCCTTGGGGTAGGCTTGGGGGTAGGCTTGGGGGTADesign primers
1876999GTGATACTAACGTGTTACTAATACGATACTAACDesign primers
1882779GAAAAGCCGTCGACGGTAAAACCGTCAACGGATAAACCGTCGCCGDesign primers
1911958GCTGGTGCTGGCGCTGCTGCTGGGDesign primers
1922693CCTGAATTTTCCTGTATTTATCTAAATTTTDesign primers
1997506CGGCGGCCTCCGGCAGTGCGGCCTCCGGCAGCGCGGCTTCCGGCADesign primers
2038730CCGCAACCATTTCCGCAGCCATTTCCGCAGCCGTTTDesign primers
2123814GCC-GCC-GCC-TCC-TCC-GCC-GCC-ACCDesign primers
2254833GGTTCT-TGTTCC-TGTTCC-TGTTCC-TGTTCC-TGTTCCDesign primers
2327627TCACAATGCCGTCACGATACCGTCACGACGCCGDesign primers
2361374AT-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TG-TGDesign primers
2379462TTCTTCTGCTTCTTCGTCTTCTTCDesign primers
2408962GCCATG-GCCATG-GCCACG-GCAATGDesign primers
2481230CGCTTTTCCGGTCGGTTTTACGGTCTGTTTTCCGGTDesign primers
2691296CCTGTGTGGCGCTGTGTGCCCTCGTGTGGCDesign primers
2702160TATTTCAGGCACAAGCGAAA-CGACTCAGGCACAAGCGAAA-CGACTCAGGCACAAGCGAAADesign primers
2735801GGACGTACCGGAAGACGAACCGGAGGACGTACCCGAGGATGTACCGGAGGGCGTGCCGGADesign primers
2791291CATCAGCGTCAGCGTCAGCACCAGDesign primers
2829862CACTCC-CAGTCC-CAGTCC-CATTCCDesign primers
2910776CACAGCGGCGCACAGGGGCCGACAGGGGCGDesign primers
3152082CAATATATTTATAATATATTGACAATATTTTAADesign primers
3166595TAATCAGGGTAATCAAGGTAATCAGGGDesign primers
3204304GGTGCTGGTGCGGCTGCTGGTGCCDesign primers
3279458GGGTTTTACGGTTTTATGGTTTTADesign primers
3649611TAGAGCGTA-TAGAGCGTA-TAGGGCGTADesign primers
3805239CGCCACCGCTACCGCCAGCGCCCCDesign primers
3811458CTGCGGCTGGGGCTGCGGCTCCGGDesign primers
3811843CTGACTGCGGTCTGCCTGCTGTCGGGCTGCGGTDesign primers
3830770AGCGCTTCTTCCAACTCTTCTTCCAGCCCTTCCTCCDesign primers
3858974AACGTTACCGGCGGCTCCATCGCCGTTACCGACGGCTCCATCGCCGTTACCGGCGGAACCATCDesign primers
3872007ACACGCTCGTTCATA-CCACGCTCGTTCATA-CCACGCTCTTCCATADesign primers
3899465CATCCTGACGCC-CATCCTGACGCC-CATCCTGCTGCCDesign primers
4022499GGATCATCCGGATCATGCGGATCAGCCGGATCAGCCDesign primers
4106081TTG-ATG-TTG-GCG-TTG-ATC-TTG-GAG-TTG-TTG-TTG-GTGDesign primers
4253530GAGGAAGTGGAAGGGGAAGAGGATDesign primers
4404328AGCGCCAGCCCCAGCGCCAGCTCCDesign primers

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