Microsatellites /Tandem Repeats database

Genome: Bacillus subtilis subsp. spizizenii TU-B-10

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
463692TCATGATCATGCTCGTGATCATGGDesign primers
643889AAGAAAAAAACAGAAAACAAAAAAADesign primers
780779TATGGGCGGCATGGGCGGTATGGGTGGDesign primers
885511GGGGATGTGGATGGGGATGGGGAADesign primers
1185394CT-TT-TT-TT-CT-AT-TT-TT-CT-TT-TT-TTDesign primers
1361222TTTTTCTTTCTCTTTCTCTTTGTCDesign primers
1363278TATGGCGGCGGTTATGCTGGCGGTTACGGCGGCGGCDesign primers
1385604TCCGTATCCTCCGCCGTATCCTCCACCATATCCTCCGCCGTATCCTCCACCATATCCTCCDesign primers
1597704TGAATCAGCTGAATCTGCAGAATCAGCDesign primers
1613096GACGAA-GAGGAA-GAGGAA-GAAGAADesign primers
1795745TCAAAATACTCAAAACACTCAAAATGCDesign primers
1987052CCACTGCTAACCAA-TTACTGCTAACCAA-TTACTGCTAACCAADesign primers
2002516TAATACTTTTTATCATGGTCATAATACTTTTTGTCGTAATCATAATGTTTTTTATCATGATCADesign primers
2103891TTCCTTTTCTTTTTCGTTTTGCTTDesign primers
2230489CTCGCTTTT-CTCGCTTTT-CCCGCTTTTDesign primers
2310575TAACAA-TAACAA-CAACAA-TAACAADesign primers
2726589AAAAAATAAAAAATTAAGAAAATADesign primers
2740606AGTTCTCGGAAAGGTCTCCGAAACTTCTCGCAADesign primers
3299182TATTATATAACGTTATATAACATTATATATTGTTATATTADesign primers
3469564AAGGGCGGCTGAGAGCGGCTGAGAGCGGCTDesign primers
3881510GCAGCAGGGGCAGCAAGGACAGCAGGGDesign primers
3981070TTTAATAGTTTATTAATGGTTTTTTCATATTTTDesign primers
4094037ATGAAAATGAAGATCAAACTGAAADesign primers

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