Microsatellites /Tandem Repeats database

Genome: Rhodothermus marinus SG0.5JP17-172

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
55980GCGCCAGCGCCCGTGCCAGCGCCADesign primers
282282GACGAGGGGATCGACGAAGGCATCGACGAGATGATCDesign primers
330864TCGGGCAGGTCGGGCACGTCGGCCAGGDesign primers
506490GGCGGCCGCGGCGGTGGCGGTGGCDesign primers
570448GCGTCG-GCGTCG-CCGTCG-GCATCGDesign primers
638367CGCCCGCGCCAGCGCCTGCGCCCGDesign primers
662489CTGCCGCTGGCGATGCCGCTGCCGDesign primers
676970GGAAGA-GGAAGA-AGAAGA-GGAGGADesign primers
819671GCGGCAGCGGCGGCAGCACCGGCADesign primers
843756CAGAAA-CAGAAA-CAGGAA-GAGAAADesign primers
996769CGG-CGG-CGA-CGG-CGG-CGA-CGG-CGGDesign primers
1065431GCA-GCA-GCA-CCA-CCA-GCA-CCA-GCADesign primers
1191257CAATAAGGGCTCAGAAAGGGCTCAAAAAGGACTDesign primers
1409530AT-AG-AG-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TDesign primers
1462844GCCAGCGGCAGCCCCAGCGACAGCDesign primers
1486309CGCTGGTGGCGCTGGTGACGATGGTGGDesign primers
1493803GCAGCAGCAGGAGCTGCAGCAGCGDesign primers
1556382AAGCGC-AAACGC-AAACGC-AAACGCDesign primers
1634399CCCCAGTCCCAGCACCAGGCCCAGDesign primers
1640841AGATGATGCCGATGATGCACATGATGCDesign primers
1773848GTGCCAGCAGCA-CGGCCAGCAGCA-CGGCCAGCAGCADesign primers
1935716CCAGCCCGAGCCCCAGCCCCAGGCDesign primers
2055460CCGCGCCGCCGCGTCGCCGCGCGGDesign primers
2093437CAGCGCCGGCGCCAGCGGCAGCGTDesign primers
2099177CT-GT-GT-GT-GT-GT-GT-GT-GT-GT-GT-GTDesign primers
2111931CCTCGTCTTCGTCCTCCTCTTCGTDesign primers
2298422TCCTGGTGCTGGGCCTGGTGCTGGDesign primers
2401286CGCTGC-CGCTGC-AGCTGC-TGCTGCDesign primers
2445518AGCGCCTGCGCCCGCGCCAGCACCDesign primers
2480490GCACCAGCCCCAGCAGCAGCGCCADesign primers
2553705TCAGCGTGAGCGCCAGCGACAGCGDesign primers
2600854ACGGCCCGTAGTAGAACGGGTCGCAGTAGAACGGATCGTAGTAAADesign primers
2655896CACCAGCAACGCCAGCAACACCAGCACDesign primers
2744568GCCGGCCCCGGCGCTGGCGCTGGCDesign primers
2871244TGGCCCCGGCGTGGCCCATGCGTCGTCCCGGCGDesign primers
2989036ACCGCACCGAAACGCCCCGCACCGTDesign primers
3076782TTC-GTC-GTC-TTC-GTC-CTC-TTC-GTC-GTCDesign primers

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