Microsatellites /Tandem Repeats database

Genome: Acidithiobacillus ferrivorans SS3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
116111AAAACGTCATAAAAATGTCATAACAACGTCATADesign primers
424671GATGAGCACCCGATCAGCACCCGATGAACACCCDesign primers
1070975AAGTTCACC-AAGTTCACC-AAGTTCACCDesign primers
1172887CGCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAG-ACCGGAGDesign primers
1882431AGGGGTGCTCCCAGC-AGGGGTGCTCCCAGC-AGGGGTGCTCCCCGCDesign primers
1884696AA-AA-GA-AA-AA-AA-GA-AA-AA-AA-GA-AADesign primers
1894056TCACTCTCACTAACTCTCACTAACTCTCACTAACTCTCACTCACTCTAACDesign primers
1898003TTGTTTTGC-TTGTTTTGC-TTGTTTTGCDesign primers
1900497ACATCGGTT-ACATCGGTT-ACATCGGTTDesign primers
1918145AGCAGG-AGCAGG-AGCAGG-AGCAGGDesign primers
1919420AAAAAG-AAAAAG-AAAAAG-AAAAAGDesign primers
1925427GAAAAAGCA-GAAAAAGCA-GAAAAAGCADesign primers
2195815GGTGCC-GGTGCC-GGTGCC-GGTGCC-GGTGCCDesign primers
2195846GTGGTGCCG-GTGGTGCCG-GTGGTGCCG-GTGGTGCCGDesign primers
2369226TCGGTGAGCAAGTCAGTGAGCAAGTCAGTGAGCAAGDesign primers
3165185GACCA-GACCA-GACCA-GACCA-GACCADesign primers

Please help us improve this resource by reporting problems, suggestions etc.