Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Cupriavidus necator N-1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
17348	GTCGTCGGCGGTCGTAGGCGATCGCCGGCG	Design primers
21600	GCGCCTGGCAGCTTCTGGCAGCGCCTGGCT	Design primers
49276	ACGCACCGGCGCGCAGCGGCACGCCGCGGC	Design primers
95443	TCGGCC-ACGGCC-TCGGCC-TGGGCC	Design primers
165057	CCGGCGTGACCGCGGGCGTGGCCGCCGGCATGACGG	Design primers
172635	CACCGGCACCGATACCGGCATCGG	Design primers
182728	GCGGTG-GCAGTG-GCAGTG-GCCGTG	Design primers
186316	TGGTGGTGGTGGTGATGGTGGTCG	Design primers
186415	TCATGGTCATGATCGTGGTCATGG	Design primers
273901	GTCGTGGTGGTGGCCGTGGCCGTG	Design primers
273927	CATGGTCATGGCCGTGGTGATGGT	Design primers
293397	GGCCACGGCCATGGGCACGGGCAC	Design primers
377458	GGCGCCACGCCAGGCACCGCGCCAGGCACCACGCCA	Design primers
380832	GGCGGGCGCGGGGGCCGGAGCGGGTGCGGGCGCGGGGGCCGG	Design primers
402607	GCTGGTGCTGGCGCTGCTGGTGGTGCCGGTGCTGTT	Design primers
406268	GTGTTGC-CCGTTGC-CCGTTGC-CCGTTGC-CCGTTGC-CCGTTGC-CCGTTGC-CCGTTGC	Design primers
413835	GCGGCGGCCAGGGCGGTGCCCAGGGTGGCGGCCAGA	Design primers
428638	CGGCGCCAGCGCCGGGGCTGGCGC	Design primers
442442	CTGCGCCTGGGCCTGTGCCTGCGC	Design primers
471125	TCCGGCCAGTCGGGCCAGTCCGGCAAG	Design primers
475678	GCGGCTGCGGCAGCGCCTGCGCCT	Design primers
550844	CAGGGC-CAGTGC-CAGTGC-CAGCGC	Design primers
551492	GGCGGCGTCGGCAGCGGCGGCGCC	Design primers
596351	CCAGGCCCAGACCGAGGCCGAGGC	Design primers
612886	CGGCGCCGGTGCCGGCGCCGGCGA	Design primers
709377	CAGGGCCAGCGCCAGCGCCAGGCC	Design primers
723397	CGGGCGGCA-TGGGCGGCA-TGGGCGGCA	Design primers
738591	CGGGCA-CGGGCA-CGGGAA-CGGGCA-CGGGCG	Design primers
777367	TGCACAGGGCTTGCACAGGCTTTGCACAGGTTT	Design primers
788566	CCACCGCCAGCGCGACCGCCACCG	Design primers
881846	TCTTGACCGCGGTCTTGGTCGCGGTCTTGCGCGCGG	Design primers
1000398	GGCGGCAGCAGGCCCCAGCAGGCGGCTGCG	Design primers
1278828	CGCGCTGGCGCTTGCGCTCGCGCT	Design primers
1412680	GCAGCCGCCGCAGCCCCCGCAGCCCCC	Design primers
1476590	CGATGACGAAGACGGTGACGATGACGATGA	Design primers
1500355	CAGCCGCGCGCTGCTGCGCGAGGCCGCGCG	Design primers
1582351	CACCACCACCACGACCACCAACAC	Design primers
1609731	CGCTGCGCAGCGCGGCGATGCGCTC	Design primers
1627415	CCGCAC-CGGCAC-CGGCAC-CGGCAC	Design primers
1628042	TGCCAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG-CCGAAG	Design primers
1628413	GAAGCCCCG-GAAGCCCCG-GAAGTCCCG-GAAGTCCCG	Design primers
1628565	GCCGGC-GCCCGT-GCCGGT-GCCGGT-GCCGGT-GCCGGT	Design primers
1637532	AGCACCAGC-AGCACCAGC-ACCACCAGC	Design primers
1637627	CGCGGGCGCGGCGGGCGCGGCGGGCGC	Design primers
1661557	GCGGCCGCTGCCGCGACCGCGGCG	Design primers
1677421	GCGGCGCCGGCGGCGGCAGCGCCG	Design primers
1712017	CTGCCGATGCCGCAGCCGATGCCG	Design primers
1764476	CCGGCA-TCGGCA-TCGGCA-TCGGCA	Design primers
1786649	GGCGCAGCTCGCGCAGCTGGCGCAGCA	Design primers
1865921	GGGGCGTGGCGGGGGCGGGCGGGGC	Design primers
1969200	TCTGGGACCGT-TCTGGGACCGT-TTTTGGACCGT	Design primers
1972342	CCATGAAAGCCACCATGCGAGCCACCATGCGAGCCA	Design primers
2067673	AAGCGG-AGCCGG-AGCCGG-AGCCGG-AGCCGG-AGCCGG	Design primers
2067736	GGCCTCGGCTTCGGCCTCGTCCTC	Design primers
2087100	CGGCGCAGCGCAGCGCAGCGAGGCG	Design primers
2091249	CCGGGTCGCTTCCCGGGTCATTTCGCGGGTCGCTGC	Design primers
2114838	GTGGCCGTGGGCGTGGCCGTGGGC	Design primers
2247955	GCCGAAGCCCCGTGCGGAAGCCCCGCGCCGAGGCGCCGT	Design primers
2277493	CGCTGTCGCAGTCGCTGCTGCTGT	Design primers
2289892	TCGGTTGCCGCCGCGGTTGCCACCACGGTTGCCGCC	Design primers
2291442	TGCCCTGGCCGCCCTGGCTGCTCTGGC	Design primers
2306717	GCAGCAGCGGCCGGTGCCGGGGCAGCGGCGGCAGGTGCCGGAGCGGCAGCAGCCGGTGCGGCG	Design primers
2421387	CGGCGCATCAGCGCATCGGCGCCT	Design primers
2619661	GTGATGCT-GCTGTGCT-GCTGTGCT-GCTGTGCT-GCTGTGCT-GCTGTGCT	Design primers
2682791	GTGGCAACACCGGTGCCAGCACCGGTGGCAACGGCG	Design primers
2691496	CAGCGCCACCGCCGGCGCCAGCCC	Design primers
2691996	CGCGGGCGTGTCGGCGGCGGGCGTGTCGGCGGCCGGCGCGTCGGC	Design primers
2726811	CGGGCGCGGGCCTGGGCGCGGGCA	Design primers
2794600	ACCGGCGCCGGCAGCGGCATCGGC	Design primers
2835802	CTCGGCGTCAGCCTTGGCCTTGGCGTCCGCCTGGGCCTTGGCGTCCGCCTGGGC	Design primers
2835993	GTTCCGCTTCCCTGCGCTCGGCTTCCTTGCGTTCCGCCTCTTTGCGCTCGGCTTCCTTGC	Design primers
2993169	CCGGTTGGGCCGGTTGGCCCGGCTGGG	Design primers
3008228	CCGGCACCGGCGCCGTCAACGGCA	Design primers
3008713	GAGGCCGACGCCGTGGCCGCGGCC	Design primers
3012374	GCCGCACCG-GCCGCACCG-GCCGCGCCG	Design primers
3029708	CCCGCCTCCGCCCCCGACACCGCC	Design primers
3082930	GCCGCGGCCGCAGCGGCGTCCGCG	Design primers
3235195	GCGCCAGGGCCAGCACCAGCGCCG	Design primers
3245263	AGCCCGTCGAGCGCGTCGAGCCCGCCG	Design primers
3255580	CCGTTCCGTGCAGTTCCATGCAGTTCCGCG	Design primers
3262062	CTTGGCGGCAGCCTTCTTGGCAGCCGGCTTCTTGGCAGCAGCCTTCTTGGCAGCCGGCTTCTTGGCAGCAGCCTTCTTGGCAGCCGGCTTCTTGGCGGCAGCCTTCTTGGCAGCAACCTTCTTCACTGCAGCCTTCTTGGCCGGAGCCTTCTTGGCGACAGCCTT	Design primers
3262237	ACCTTCTTGGCGGCAACCTTCTTCACTGCAGCCTTCTTGGCCGGAGCCTTCTTGGCTGCAACCTTCTTGGTCGCGACCTTCTTGGCGGCT	Design primers
3262336	ACCGCGGCCTTCTTGGCCGGGGCCTTCTTGGCGGCTGCCTTCTTG	Design primers
3262486	GCCTTCTTGGCGGCCGGCTTGGCGGCCTTCTTAGCC	Design primers
3269256	CCGCTGCTGGCGCTGCTGCCGCTGGTG	Design primers
3270163	CCTGGGCCTGGACCTTGGCCTGCG	Design primers
3332109	GGCCC-GGCGC-GGCCT-GGTCC-GGCGC-GGCGC-TGCCC	Design primers
3343864	GCCGCCTTCGCTGCCTTCGCCGCCTTC	Design primers
3348892	CGACCACCACCACGGCCACGCCCA	Design primers
3388446	GCCAGC-GCCAGC-GCAAGC-CCCAGC	Design primers
3460757	CTAGCGCCCGATAGTGCCCGATAGCGCCCGATAGCGCCCG	Design primers
3511351	GGCTGCGCG-GGCGTAGCG-GGCGTAGCG-GGCGTAGCG-GGCGTAGCG-GGCGTAGCG	Design primers
3526789	GGGTCGATCGGATTCCGGTCGCTCGGAGTCGGATCGATCGGCGTC	Design primers
3633624	GCGACTGCT-GCGACTGCT-GCGACTGCT	Design primers
3687644	GCTGGC-GCTGGC-GGTGGC-GCTGGA	Design primers
3692054	TGTTCCTGATCCTGTACCTGTTCC	Design primers
3702689	GCGCTGGCGCAGGCGGTGTCGCTG	Design primers
3719657	GCGCCA-GCGCCA-GCCCCA-GGGCCA	Design primers
3740514	AGAACCAAAAAACCAAAAAACCAA	Design primers
3753973	ACCAGCACCAGGGCCAGCGCCAGC	Design primers
3814661	CTGGCGGCGCTGACGGCGCTGGCCGCG	Design primers
3817676	AAGGCACCGGCCAAGAAGCCGGCGGCCAAGAAGGCTCCGGCCAAG	Design primers
3833137	ACGCTGGCGCTGACGGTGGCGCTG	Design primers
3865074	GCCTGCGCCCGCACCTGCGGCTGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

17348

GTCGTCGGCGGTCGTAGGCGATCGCCGGCG