Microsatellites /Tandem Repeats database

Genome: Parachlamydia acanthamoebae UV7

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
160820TCA-TCT-TCA-TCA-TCT-TCC-TCA-TCG-TCADesign primers
405753TCCTTTTCTTTTTCTTTTTTCTTTDesign primers
443925AA-AA-AT-AA-AT-AT-AA-AA-AC-AA-AA-AADesign primers
514717CG-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TTDesign primers
566982AAAAAAATAAAAATAAAAGAAAAGAAAAGADesign primers
580441AAAAAAATAAAAATAAAAGAAAAGAAAAGADesign primers
616028GAAGATGAAGACGAGGATGAAGATDesign primers
644484GTGGCTCCAGTAGCTCCAGTGGCTCCGDesign primers
646252CTCCGGTTGCTCCAGTTGCACCGGTTGDesign primers
646423CTCCGGTTGCTCCAGTTGCACCGGTTGDesign primers
646531CTCCGGTTGCTCCAGTTGCACCGGTTGDesign primers
1106734TCTAAAAAACCTAAAAAATCTAAAAAADesign primers
1253534GCAAAAGAAGCTTCCATATTAGCAAAAGAAGTATCTGTATTAGGAAAAGAAGCATCTGTATTAGCAAAAGAAGCTTCCTTATTGDesign primers
1390966AA-GA-AA-TT-AT-TA-GA-GA-TT-AT-AA-AA-AA-AT-ATDesign primers
1486506TTTTTTTTCTTTTTTTTCTTATTTTDesign primers
1569072GA-AA-AA-GA-AC-AA-GC-AA-AA-GA-AA-TADesign primers
1684114TTCAGTTTCGGTTTCAATTTCAGTTTCTGTDesign primers
1767921TTCAGCTTGTTTTAATCTTGTTTTCAGCTCGGTDesign primers
1808760TAAAAAAATCTATAGAAATCTACTAAAATCDesign primers
1825528TGC-TGC-TCT-TGC-TGC-TGT-TGT-TGT-TGC-TGC-TGC-TGT-TGT-TGC-TGC-TGC-TGT-TGT-TGT-TGCDesign primers
1825594TGCTGTTGTTGTTGCTGCTGCTGCDesign primers
2065964ATTCAGAGTCAGAATCAGTTTCAGDesign primers
2121617TCATCGTCGTCATCGTCATCGTCATCGTCATCGTCATCATCATCATCADesign primers
2122910AGGATC-AGGATC-TGGATC-AGGATCDesign primers
2195840CAGCTGCTGCTGGAGCTGCTGCTGDesign primers
2245042AAAAAGACTAAAAAAGCATAAAAATGACAADesign primers
2319237TCCAGGAGCTCCAGGAGATCCAGGACCDesign primers
2353367AA-AA-AT-AG-AA-AC-AT-AG-AA-AA-AT-AADesign primers
2413717TTTTTATTAATTTTTGTTATTTTTTCTCAADesign primers
2413788TCTTTTTTAACCTTTTTTGATCGTTTTTGADesign primers
2428201GGACATGTTGGACATGTCGGACAAGTTDesign primers
2524652CTTCTTCCTCTTCTTCCTCTTCCTDesign primers
2531841TAATTAATTATTATTAATAAAAGTTAATTADesign primers
2622947ATTTACTCAGCGCATTGATTAAATTTACTCAGTGTTTTGAGTAATTTTACTCAATGCATTGAGTAADesign primers
2765984CCAAATTCTGCCAGATTCTGCCAGATTTTGDesign primers
2766082CCAGATCATGCCAGATTCTGCCAGATTCTGDesign primers
2798910CCTGTAGGTCCTGTAGCTCCTGTAGCTDesign primers
2799987AAATCAAATTCATAATCAAAATCGDesign primers
2861359TGT-TGT-TGT-TGC-TGC-TGC-TGT-TGC-TGC-TGT-TGT-TGTDesign primers

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