Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Ramlibacter tataouinensis TTB310

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
115840	GCCGCCGCGCCGGCGCGCCGCCCC	Design primers
125288	CGCGCGCGCCCACGCGCACCCGCGCCAGCC	Design primers
137477	TTGATGGCATTGATGGTATTGATGGCT	Design primers
321220	GCCAGCGCCTGCACCAGCGCCAGC	Design primers
326491	GGCTGGGCCTGGTGGTGGGCCTGGCGCTGGCCCTGG	Design primers
360599	AAGGACAAGGCCATGGACAAGGAC	Design primers
369137	CCGATG-GCGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG-GTGCTG	Design primers
426785	GCGCCGCCT-GCGCCGCCT-GCGCCGGCT	Design primers
428235	GGCCTGGGGCTGGGGCTGGCCCTG	Design primers
431809	CCATCGGCATCGCCATGGGCATCG	Design primers
442070	GACCAGGGCCAGGCCCAGGCCCAG	Design primers
457528	GGC-GGC-GGC-GGC-CGC-GGC-GGC-AGC	Design primers
465770	GGCCGGGGCCCGCGCCGGCGCCGG	Design primers
527951	CGGCCGCGGGCGCCGCCGTGGCCG	Design primers
559276	AGCGCCAGCACCAGCGCCAGCGCG	Design primers
561857	GCGGCCGCGCCCGCTGCCGCGGCC	Design primers
596224	CGGCGACCGCGACGGCGACGGCCA	Design primers
611644	GCGGGG-GTGGGG-GTGGGG-GAGGGG	Design primers
616038	GGCCCGGCGCGGCACGCCCCGGGCC	Design primers
714393	CAC-CGC-CGC-CGC-CAC-CGC-CGC-CGC	Design primers
720567	CGGCGCGGCGCCGCGGCGGCGCCG	Design primers
748434	GGTGCC-GGTGCC-GGCGCC-GGTGAC	Design primers
757810	TCGGCACCGGCATCGGCTGCGGCA	Design primers
768053	CGGCCAGCCAGCCAGCGGGCCAGC	Design primers
864391	TCGCCG-TCGCCG-TCGTCG-CCGCCG	Design primers
940165	CCGCGACGCGCAGCGCCGCGGCGCG	Design primers
959270	GCCAGG-ACCAGG-ACCAGG-ACCAGG	Design primers
1053412	GCGCCGCGGCGCCGGGGCGCCGGG	Design primers
1094098	GGAGCGGCGCCGGCAGTGGCGCCGGCAGCGCCGCCG	Design primers
1105466	GCTGGC-GCTGGC-GGTGGC-GCTGGT	Design primers
1150086	GACCATGAGCATGACGATGACCAT	Design primers
1166107	CAAGGCCGTCAAGGGCGTGAAGGCCGT	Design primers
1190216	GCC-ACC-GCC-GCC-GCC-CCC-ACC-ACC-ACC-ACC	Design primers
1190484	TGGCCGTTGTAGCCGTTGTGGCCGTTG	Design primers
1216776	GGCGCTGGCCCTGGCCCTGTCGCT	Design primers
1341616	CCACGACCACCACCACGACCACGC	Design primers
1343147	GGCTACGGCGGCCAGGGCTACGGCCAGCAGGGCCACGGCGGCCAG	Design primers
1343800	CGGCACCACCGGCACCAGCGGCAGCAC	Design primers
1352487	CCACCG-GCACCG-GCACCG-GCACCG	Design primers
1364597	CCTGGCCCAGGCGCTGGCCCTGGT	Design primers
1371572	GGCGCTGGGGCTGGCGCTGCCGCT	Design primers
1422220	CGGGGCCGGGCGGTGCTGGGCGCGG	Design primers
1432513	CCG-CCG-CCC-CCG-CCC-CCG-CCC-CCG	Design primers
1533154	AGCCG-GGCCG-GCCCG-GGCCG-GGCCG-GTCCG	Design primers
1547895	AACGCCGTGCCACCT-GCAGCCGTGCCACCT-GCAGCCGTGCCACCT	Design primers
1587722	CGGCGGCGGGGGAGGCGGCGCCGG	Design primers
1641085	CTGGCGCTGTCGCTGGTGCTGGCGCTGGCC	Design primers
1641349	GCGCTGGTGCTGGTGCTGGCCCTG	Design primers
1651567	CTGATGCTGGTGCTGATGCTGCTG	Design primers
1661826	GCAGCGGCGGCAGCCCGGGCGGCGGCAGCCACGGCGGCGGCCGCC	Design primers
1662353	GCGGCT-GGGGCT-GGGGCT-TCGGCT	Design primers
1707391	TCACCGGCTGACCGGCTGACCGGC	Design primers
1728544	GGCTGCCGGCGCGGCTGGCGGCGCTGCTGCTGGCGC	Design primers
1736723	GGTGGTGCTGGTGGTGCTGGTGAT	Design primers
1759036	GCCGCCGTCGCCGCCGCGGCCGCC	Design primers
1768068	CAGGGC-CAGGGC-CTGGGC-CACGGC	Design primers
1796519	GCCGGTGCCCGTGCCGGCGCCAGT	Design primers
1797433	GGTGGCCTCGGCGGCTTGGGCGGCCTCGGGGGCATGGGCGGCCTCGGGGGCATG	Design primers
1824369	GGGCGCGCGCGCGGGCGAGGGCGG	Design primers
1944730	CGCCAGCGCCCGGGCCAGCTCCAG	Design primers
2011868	CGGGGCAGGGCGGCGGGGGGCGGGC	Design primers
2077522	TGGGCCTGCTGGCCCTGCTGGGCCTGG	Design primers
2087046	GTG-CTG-GGG-CTG-CTG-CTG-GTG-GTG	Design primers
2093001	GGCCAG-GGCCAG-GTCCAG-CGCCAG	Design primers
2095194	GTGGCGCCGGGTGGCTCTGGGCGGCGCCGA	Design primers
2200060	TGCTGGAGCTGGGGCTGGTGGTGG	Design primers
2272492	CGCGCCCTGCGCGCCATGCCCGCCCTG	Design primers
2295480	GCAGGCGCGGGCGCAGGCGCACGC	Design primers
2298495	CATGTCCGGCAGGCCCAGGTCCAGCAGGCACACGTCCGGCGGGTC	Design primers
2305228	GCG-GCG-GCG-GAG-GGG-GCG-GCG-GCG	Design primers
2307115	TCTTCCTTGTGTTCCTTGTGTTCCTTG	Design primers
2307180	GTCGTCATCGTCATCGTCGTCGGC	Design primers
2332011	AGCCCGAACCCGAGCCGGGGCCCGAGCCCT	Design primers
2352759	GCTGCCGCTGCGGGTGCCGCTGCC	Design primers
2418986	ATGGTGATGGTCAGGGTGACGGTGCTGGTG	Design primers
2425825	GTTGTCGTTGTTGGTGTCGTTGAC	Design primers
2471100	CGGCCGCCGCAGCCGCCGCGGCCACCG	Design primers
2473355	GCCGGGGCCGCGGCGGGGGCCGGGGCCGGC	Design primers
2477604	CGCTGCGGCTGCAGCTGCCGCCGC	Design primers
2522101	GCGAAGAAAGCGCCCGCCAAGAAGGCCCCCGCGAAGAAGGCGGCA	Design primers
2522147	CGGCCAAGAAGGCCGTCGCCAAGAAGGCCCCGGCGAAGAAGGCCG	Design primers
2522227	CCTGCCAAGAAGGCCGCCGCGAAGAAGGCCCCCGCCAAGAAGCGC	Design primers
2532339	GGCCGGCCCGCGCCGGGCCTGGCTG	Design primers
2532365	TGCCGGTGCCGCTGGCGGTGCTGG	Design primers
2561136	TCACCAGGA-TCACCAGGA-ACACCAGGA	Design primers
2591995	CCGGCGCGGGCGCGCGCGGGCCGGCGCAGC	Design primers
2625507	GCCGCCGCCGACGCCGCCGCTGCC	Design primers
2650418	GCCGCCACCGCCGCCACCGCCGCG	Design primers
2707336	CGGCAGCGGCGGCGGCCGCGGCAT	Design primers
2743473	GCGGCGGCGGCAGCGGAGGCGGCG	Design primers
2743503	GGGGCCGGAGCCGGGGCCGGGGCC	Design primers
2743545	GGGGCCGGGGCGGGTGCCGGCGCC	Design primers
2780365	CTGGCGCTGGGGCTGGCGGTGGCG	Design primers
2801880	GACGGCGAAGGCGGCGAAGAAGGCGAA	Design primers
2858081	GCCGGCCGCGGCCGGGCCCGGCCGGCGGCG	Design primers
2869978	GCGCATAGACCGGCGCCGGCTGCACGTAGACCGGGGCGGGCTGCACATAGACGGGAGCCGGCT	Design primers
2875344	GCCGCGCCGCCGGCCACGCCGCCCGCCACGCCACCG	Design primers
2877820	TGCTGGTCATGCTGGGCATGCTGGGCA	Design primers
2879690	CCG-CGC-CGG-CCG-CGG-CGG-CGG-CGC-CGG	Design primers
2906663	GGTCGCGCTGCTGCTGCCCACGCTGCTGCTGGTGGCGCTGCTGGT	Design primers
2922281	CGGCGCCTGGCGGCGCGCGGCGGCGCCTTT	Design primers
2923203	GCCCTGGCGCTGGGCCTGGGCCTGGCGCTG	Design primers
2927363	CAGCGCGAGCTGCGCGAGGCCCGGCGCGACGTGCGCGAAGCCCGGCGCGACCTGCGCGAGGCG	Design primers
2985151	GCGGCGGCGGTAGTG-CCGGCGGCGGTAGTG-CCGGCGGTGGTGGTG	Design primers
2985200	CGGTGGAGGCGGTGGCGCCGGAGCTGGTGGTGGCGGTGGCGCCGGTGCAGGCGGTGGCGGTGGCGCCGGTGC	Design primers
2985273	GGCGGTGGCGCTGGCGCCGGTGCA-GGCGGTGGCGCTGGCGCCGGTGCA-GGCGGTGGCGCTGGCGCCGGTGCA-GGCGGTGGCGCTGGCGCTGGTGCC	Design primers
3004407	CGCCGCCGCCGGCGCAGCCGCTGC	Design primers
3004669	GCGCCCGCGCCGACGCCCGAGCCC	Design primers
3031417	GGC-CGC-CGC-CGC-CGC-CGC-CGC-CGC-CGC-CGC	Design primers
3047302	GGTGCACGTGCAGGTGCCGGTGGA	Design primers
3048043	GCGCGGCGAGCGCGCCGAGCGCGGTGA	Design primers
3062658	CAGCGCCTGCGCCAGCGCCAGCCC	Design primers
3100073	CGTGGCCGCCGCGGCCGCCGTCGCCGC	Design primers
3214589	GGCCACCGCGGCCGCCGCGGCCAGCGC	Design primers
3237865	GCCACGGCCAGGGTCACGGCCACG	Design primers
3260580	GCTGCTGCCGCTGCTGGTGGTGCTGCCGCTGCTGGT	Design primers
3314618	GGCCTCGGCCTGGCCCTCGGGCTC	Design primers
3327873	ATCACCAGCATCACCACCAGCACCAGC	Design primers
3462397	CGCGGCGCTGCGCGCCGAGGCGCCGCGCGC	Design primers
3468511	GGCGTTGGCTCGGGCGTTGCTACGGGCAGCGGCTCGGGCGTTGCTGCGGGCGTTGGCTCGGGCGTTGCCGTT	Design primers
3468584	CGC-CGC-CCC-CGC-CCC-CGC-CCC-CGC-CCC-CGC	Design primers
3470596	GGCGCCGC-GGCGCCGC-GGCGCTGC	Design primers
3518207	CCACCGGCGCCACCCGCGCCACCGCCG	Design primers
3518796	CAGGTCGGCGCCCAGGTTGGCGACCAGGTCGTCGCG	Design primers
3522272	CAGGCCGTCCAGGCCGCCCATGCCGTC	Design primers
3536047	TGTCGCTGTGGCTGTCGCTGGCGC	Design primers
3546574	CGCCAAGGCCGCGCCGGCCAAGGCGGCCCCCGCCAAGGCCGCCGG	Design primers
3553828	GCGCCG-GCGCGG-GCGCGG-CCGCCG-CCGCCG	Design primers
3566338	AACTCTCTCTGTGCTCTCTCTGTGCTCTCTCTG	Design primers
3592801	GCTGGCGCTGCCGCTCGCGCCGGC	Design primers
3628051	CGGTGCCGGCGGTACCGGCGGTACCGG	Design primers
3673495	CGGCCGCGGGCGAGGCCGCGCCCG	Design primers
3675478	CGCCGCCACCGCCGGCGCCGCCGC	Design primers
3679916	CGGCCGCCAAGAAGGCCGCTGCGAAGAAGGCCCCGGCCAAGAAGGCCGTCGCCAAGAAGA	Design primers
3680021	CCGTCGCCAAGAAGGCGCCCGCCAAGAAGGTCGCGGCCAAGAAGG	Design primers
3680068	CCGGCGAAGAAGGCGGCTGCCAAGAAGGCGCCGGCGAAGAAGGCC	Design primers
3680137	AAGGCCGCTGCGAAGAAGACCGCGGCCAAGAAGCCCGCCGCGAAAAAGGCCGCCGCCAAG	Design primers
3718443	CAACAGCAACGGCAACGGCAGCAG	Design primers
3749482	GGCGGCATG-GGCGGCATG-GGTGGCATG-GGCGGGATG	Design primers
3839164	CGA-CGA-CGA-AGA-CGA-GGA-CGA-CGA	Design primers
3873168	CGGCGGCGGAGGCGGCGCCCGCGG	Design primers
3925707	GCGCTGGCCAGCGCCGGCGAGGGCTGGCCC	Design primers
3925986	CCACCACCACCGCTACCACCGCCA	Design primers
3992152	GCCGGC-GCCGGT-ACCGGC-ACCGGC-ACCGGC	Design primers
3994030	CGGCCACCGCCACGCCCACCGCCA	Design primers
4054702	CGGCGGCGGCGGTGGCCGCAGCGGTGGTGGCGGCGGCTATGGTGG	Design primers
4054761	GCGGCGGCGGCGGTGGCGGCGGCT	Design primers
4055386	GTGGTGGTGGTAGTGGCGGTGGCGGTGGCG	Design primers
4055441	CGGCGGCGGTGGCGGTGGCCGCGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

115840

GCCGCCGCGCCGGCGCGCCGCCCC