Microsatellites /Tandem Repeats database

Genome: Buchnera aphidicola (Cinara tujafilina)

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
7128AAAATAAGATAAAGTAAATTAGAATDesign primers
11441TTAAAAAATATAAAAATATAATAAAAATTADesign primers
17176ATTTAATAATGAATTATTTATTAATGAATTTTTTAAAACTGAATTDesign primers
26464TT-TT-AT-TT-TT-TT-AA-TT-TT-TT-CT-TTDesign primers
26556TATTAATATTATTTTTAATATTAADesign primers
29470TTGAAATGAATTGATTTGAATAGAADesign primers
33108ATTTA-AAATA-AAATA-AAATA-ATATT-AAATADesign primers
46483TTTTTTTTATTTTTTTTATTTTGTTDesign primers
50540TTAA-TAAT-TTTT-ATTA-ATAT-TTAT-TAAT-TTDesign primers
50809TT-TT-TA-TT-TT-TT-TT-AT-TT-TT-TT-TT-TDesign primers
50970TATATTTTATAATATAATATTAAATDesign primers
51026TT-TT-TT-TA-TA-TT-AT-AT-AT-TT-TT-TA-TA-TT-AT-AT-AT-TT-TT-TA-TA-TT-TT-TTDesign primers
52573TT-TT-TT-TA-TT-TT-TA-TT-TC-TT-TT-TT-TC-TT-TTDesign primers
53751AAAAATTATTTAATATTATTAAAAATTTTADesign primers
58996ATTTAAGTTAATTTTATTTGTTTTADesign primers
63595TTTTTTTGTTTTTTCTTTATTTTTADesign primers
71152TATTTTTTTATATTTTTATTTTTGDesign primers
73633TTTTTTTTGTTTTATCTTTTTTTATDesign primers
80822TAATTTTAATATAAATTTAAATTTDesign primers
80871AGAATTTTTTTTTGAATTTTTTTATTAATTTTTTTTDesign primers
85594ATATATTTTTTAATATTTTTTATAAAATAGTTTTTADesign primers
88297ATTTTAATATATTTTTATATATACTAATATDesign primers
88574TTAAATAT-ATAAATAT-ATAAATAT-TTATATAT-ATAAATAT-ATAAATATDesign primers
101225AAATTTTTCAAATTTTTTAAATATTTTTAADesign primers
103026TGAATATTTTTAAATTTTTTTTAATTTTTTDesign primers
103132TTATAAATATATTATTAACATACTATGAATATADesign primers
111272TTTTTTCTTTTTTTATTTTTTTTTCDesign primers
113441TAATTTTTTTTAATATATTTAATTTTTTTTDesign primers
125576TAAAAAATTAAAACATCAAAAAATDesign primers
127743TATTTTGTTTTTTTGTTATTTTATDesign primers
145413TTATATATTTTTATATTTTATTAATTATTTDesign primers
155030TTATTTTTTTTTAGTTAATTTTTTTDesign primers
166791AA-AT-TT-TT-AT-AT-TT-TT-AT-AT-TT-TTDesign primers
171313ATATA-ATATA-ATGTA-ATATT-TTATADesign primers
188401TTAAAAATTTTTAAATATATTTTAAAAATTDesign primers
200747TTTGTAAATTTTTTAAAATTTTTTTAATTTDesign primers
205757TT-TT-AT-AT-TT-TT-TA-AA-AT-TT-TT-AT-AT-AT-CTDesign primers
207869AAATATTTAATAAAAATTAAATAAATTTTTAAAAAATAATTTATDesign primers
211400AAAATTTT-AAAATTTT-AAAATATTDesign primers
211579AA-TA-AA-AT-AG-AA-AA-AA-AT-AT-AA-AA-ADesign primers
217301TTTATTTAATTTTAATTTTTTTAATDesign primers
222691ATGGAAATACGTTGAAATACATGTAAATTCDesign primers
223051TAATTTTATTTTTAAATTTTATTTDesign primers
223975TATTTTAAATATTTTATAAATTTTAAADesign primers
225243TTTAATTATTTAAAATTATTTTTATTTATADesign primers
226566ATTTTTTATAATTTTATATAATTATTTTTADesign primers
229983AT-TT-TT-TT-TT-AT-TT-CT-TT-CT-CT-TT-TT-TT-TTDesign primers
235975AATAAAATTAAAAAAAATCAAATCADesign primers
250170AAAAAAACAAAAAAAAATAAAAAATDesign primers
250940ATATAAATAAATATATAAAAATATTAAAAADesign primers
254357ATAAAAAAAAAAAAAAATTAAAAADesign primers
256099AAAATATAAAAATATATAATTAATTATAAADesign primers
257115AAATTTAAAAATTTATATATTTAADesign primers
264485ATAAAAATATTAAAATAATATTTTAAAACTATTDesign primers
270851AA-AA-AA-TA-AA-TA-AA-AA-AA-TA-AA-AA-ADesign primers
274445AA-AT-TA-TA-AA-AA-AT-TA-CA-TA-AA-AA-TA-TA-AADesign primers
277480AAATATTAATAAAAATTTATAAAAAATAATDesign primers
277736ATTATTAAAAAAATTATAAAAATAATTATTAATTAADesign primers
290429GATTTTTCTTAATTTTACTTAATTTTTTTTDesign primers
297918TATAAGTAAAAAAAATGAAATTAAAAAAAATAAAACTAATAAAAADesign primers
298022AAATAAAAAAAACAATAAAAAAAADesign primers
302747TATAATAATATCAATTATTATAATAAAAATTATAATAACATCTAADesign primers
314541TTATTCATATGTATTCATTTTTATTAAAATDesign primers
316871ACAAAAAAAAGAAAAAAAAGAAAAAAADesign primers
318211TAAAAAAAATTAAAAAAAACAAATAAAAATDesign primers
320568TTAATATAAATATCAATATCAATADesign primers
322564AAAAATAAATATAAAAAAAATAATDesign primers
324163TATTATTGAATAATATTAAATAATATTTAADesign primers
339905TTAAAAAATAAAAAAATTAAAAAADesign primers
341165TAAAATAAAAATTAAAAATAATATDesign primers
349372TAAAAAAAATAAAACAAATAAAAAAATDesign primers
350212AAAAATAAATGAAAAATATATTAAAAAAATATGDesign primers
352181ATTAATGAAATTTATGAAATTAATAAADesign primers
355709AATTAATA-AGTTATTT-AGTTATTT-AGTTATTT-AGTTATTT-AGTTATTTDesign primers
356665ATAATAAATATATATTTAATATATATTTAATATATAAAAAAAATDesign primers
357387AAAAATAGAAAAAAAATACCAAAACGATAGAAADesign primers
362987ATAAAATTATCTACAATTATAGAATATTATDesign primers
367638TATAAAAATATAAAATAATACAAAAAAATATTTAAAAATTDesign primers
374650AAAAAAAAATAAAATTAAAAAAAAAAATAADesign primers
403626ATATTAAAAAATAATTTATATCAAAAAATTATATATATTAAAATATATTATDesign primers
425646ATATTATTTATTATATAATATATATTTTDesign primers
428061TATATATATTTTTATAGATATTTATATATATACTGTDesign primers
433678AAA-GAA-GAA-GAA-GAA-GAA-GAA-GAADesign primers

Please help us improve this resource by reporting problems, suggestions etc.