Microsatellites /Tandem Repeats database

Genome: Geobacillus thermoglucosidasius C56-YS93

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
128068CATGAAAAAGCTTGGAAAAGCATGCAAAATDesign primers
172008TAAGTGACAAAAAAGTTGTATACTGAACAAAAAAGTTGTATACTCGACAAAAAAGTTGTADesign primers
222716AAAAAAAGAAAAAGAAACAAGAAAADesign primers
393826AAC-TAA-AAA-ATA-ATA-AAA-AAA-ATA-AAA-AAADesign primers
473578GAA-AAA-GAA-GAA-GAA-AAA-GAA-AAADesign primers
563369GGCCGTCCATTCTTTGGCGGCCCGTTCTTTGGCGGCCCATTCTTTDesign primers
697578GTGTATCATGTTTATCATGTGTATCATDesign primers
733747TGCTCATGCTCTTGTTCATGTTCATGCTCGTGCGCATGCTCTDesign primers
758972GAAAACTGAAAGAAAAATGAAGGAAAAATGACADesign primers
820142ACCGTTCAATCGTTCAACCGTTCGDesign primers
864643TT-TT-TT-TT-TG-TT-TA-TT-TT-AT-TT-AT-TDesign primers
949322AGAAAAACAAAAAGAAGAAAAAAADesign primers
979011AA-AA-AC-AG-AA-AC-AA-AA-AG-AA-AA-AADesign primers
979090CGAAGAAAATGTGGAAGAAAATGAAGAAGAAAATATAGAAGAAAATGADesign primers
1065186GCGGCGGCGGCGGCGGTGGCCGCGDesign primers
1087728GTTTTTATTTTTGTTTTCTTTTTTDesign primers
1094252GATCAATCAACGATAAATCAATCAACGGCAGACCAGTCAACAATADesign primers
1107143TTTTTCTTATTCATTTTCATTTTCDesign primers
1275286CCGCACCAGCATTATCCGTATCATCATTATCCGTATCATCATTATDesign primers
1275378TCCACATCATCCACACCATCCGCATCATCCACACCATCAACATCADesign primers
1437353GATTTTTACTAAATTTTTTACTAAAATATTTACTAADesign primers
1521634GACAGTGACGGTGACAGCGACAGTGACAGADesign primers
1682518GCGATCGCGGCGATGGCGGCGAGCGCGDesign primers
1686396GGCTCGGGCGGCTACGGCTGGGGTGGCTGCGGCTACGGCGGCTACDesign primers
1823507TATATAATAATAAATAATTATATTTAATATDesign primers
2092552TGATGGTGGTGGTGATGGTGATGADesign primers
2209923CTATTTTT-GTATTTTT-GTATTTTTDesign primers
2210084AAAAATTTTTTACAAATCTTTTATAATTTTTTTDesign primers
2260964AGATTTTCGTCGATTTTAGTAGATTTCAGTDesign primers
2301705TACATATTGATACAATTTGATACAAAATGADesign primers
2334962TAAAAGCTGAAAAGCTTAAAAGCGDesign primers
2412311TCCCATTTTTTCTCATTCTTTCTCATTTTGDesign primers
2460625CAATAGACAAAAAAGTGGAAGCATTGGACAAAAGAGTCGAAGCATTGGATAAAAGAGTGGAAGCATTGGACAAAAAAGTCGGAGCATTGGACAAAAGAGTCGAAGDesign primers
2460731ATTGGAGAAAAAAGTCGAAGCATTAGACAAAAAAGTAGAAACATTAGACAAAAAAGTGGAAACATTAGACAAAAAAGTGGAAACATTAGACAAAAAAGTCGAAGCDesign primers
2479926TTTCTTTTCGTTTGTTTGCTTTTTTDesign primers
2591336TTCCTTTTCGTTTTCCTCTTCCTTDesign primers
2634787TTC-TTC-CTC-TTC-CTC-CTC-TTC-TTC-CTCDesign primers
2780495TATTT-TGTTT-TATAT-TATAT-TATGTDesign primers
2934646TATTTTAACTTTATTTTTATTTCATTTTAACTTCATTTGAACTTDesign primers
3170788AGATATAACAGTGATACTTAATATAACAGCGATACTTAATATAACAGCGATACTDesign primers
3235487TTTTTTTATGGCTTTTTTATAGATTTTTTATAGDesign primers
3239165CCCTGGAGGCCCCGGAGGTCCTGGAGGDesign primers
3240016GTTAGACAAAATTCGACAAATTTATACAAADesign primers
3299411AAAAACGAAAAAGCGAAAAAACAADesign primers
3325019ACAACGTCCAAAACACTGCCCAAAACATTGCCCAAAACATTGCCCAAAACATTGTCCAAAACATTGTCCAAAACACTGTCCAAAACATTGTCCAAADesign primers
3457728AAAAAACACAAATAACACAAAAAACCCDesign primers
3482834TT-TT-TT-AT-TT-TA-TT-TT-TT-AT-GT-TT-TDesign primers
3513499ATCCGAAAAGAACAACAAATCATCCGGCAAGAGCAACAAACCATCCGACAAGAACAACAAACGDesign primers
3694155TCTGTTTCAGTTCCTGTTGCTGTTDesign primers

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