Microsatellites /Tandem Repeats database

Genome: Desulfotomaculum ruminis DSM 2154

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
3741AAATTAAGAAATGAAGAAATTCAGDesign primers
276885TGAAATCCGTGTAATCCGTTAAATCCGDesign primers
347896CCTTTTG-CCGAAAG-CCGAAAG-CCGAAAG-CCGAAAG-CCGAAAG-CCGAAAG-CCGAAAG-CCGAAAGDesign primers
441572TTATACAGATTTCTACGGATTTACACGGATDesign primers
493893ATTTATCATTCCTTATCATTTTTTATCATGDesign primers
624083AGGTATGTGATATTAGGTATGTTATAATAGGTATGTGGTATTDesign primers
643819AACAAGAACAATTACAAGAACAACDesign primers
650915TTCTTGTGTATTTTTATGTATTTTTGTGAADesign primers
714669TAATAATACAAATAATAATATTTCAAATTATAATAAATCAAATCADesign primers
770968CGGCATGGGCGGAATGGGTGGCATGGGDesign primers
1069663TTATGATAATGATTATCATTATTADesign primers
1107653ATGCTTGGGTGTTCGGCAATGCTCGGGTGTCTGGCAATGCTCGGGTGTCTGGCAATGCTCGGGTGTCTGGCAATGCTCGGGTGTCTGGCAATGCTCGGGTGTTCGGCGATGCTTGGGTGTTCGGCGATGCTGAGGTGTTCGGCGATGCTGAGGTGTTCGGCGATGCTCGGGTGTCTGGCAATGCTCGGGTGTTCGGCGDesign primers
1113627AGGAACAGC-CGGAACAGC-CGGAACAGCDesign primers
1117819AAAGTTGCCAAGGTTGCCGAAGTTGCCDesign primers
1155287AAAATCCGTGATAATCCGCGGAAATCCGTADesign primers
1188294AAAATCCGCGAGAATCCGTGAAAATCCGAADesign primers
1233186AAATAATGTTGAATAAAGTTAAAAATTGTTDesign primers
1310184TTGCACGGATTTTCGCGGATTTACACGGATDesign primers
1348639TGG-TGG-TGG-CGG-TGG-CGG-CGG-TGGDesign primers
1378045TGAGTTTAGTTGAGTTTAGTTGAGTDesign primers
1386613GATAAAGACAAAGATAAGGATAGAGATAAADesign primers
1469937AGGCGGAGGCAGAGGAGGAGGCAGDesign primers
1485531GAATTAACTACCGATGAAGAAACAACCACCGATGAAGAAATAGCTACAGATGAADesign primers
1657923AAAATCCGTGAGAATCCGCGGAAATCCGTADesign primers
1676941CAAAAAAACATAAAAACAAAAGAADesign primers
1817006TTATATAACTATAGATAACTATAGATAACTDesign primers
1848901TAAAAATCCGTAACAATCCGTGGAAATCCGDesign primers
1911945TAAATTTAATTAAAATAAAGTAATTDesign primers
2026022AAAATCCGTGAGAATCTGTGTAAATCCGTADesign primers
2073057ACAAAAAAACATAAAAACCAAAAADesign primers
2326779CCAGGATCAGGACCAGCACCAGCADesign primers
2400748TAAAAATCCGTGAGAATCCGTGGAAATCCGDesign primers
2401904AAAATCCGTGTGAATCCGTGGAAATCCGTADesign primers
2581032AAAATCCGTAAAAATCAGTGGAAATCTGTADesign primers
2593824GCCCCACTG-GGCCTACCG-GCCCCACCG-GCGCTACCG-GCGCTACTG-GGGCTACCGDesign primers
2656510TCCTTATTTCTTCCTGATTTCGTCCTTCTTTGTDesign primers
2680590TTGTACGGATTTCTGCGGATTTACACGGATDesign primers
2695747TCCGGGCC-GCCGGGCC-GCCGGGCCDesign primers
2755560ATG-ATG-ATG-ATG-GTG-ATG-GTG-ATGDesign primers
2781886TTTTACGGATTTCCACGGATTCTCACGGATDesign primers
2854991AATAATATTATCATAATACTATTATAATTTTATDesign primers
3055008GGCGGCAGCGGCGGCGGTTGCGGCDesign primers
3106159TTATTTTTAATTTTAGTTTTATTGDesign primers
3204274TA-TT-TT-TG-TT-TG-TT-TA-TG-TT-TT-TT-TG-TG-TTDesign primers
3260040TTTATTATTTTATAATTTTATTAADesign primers
3260077TAAAATATTTTAAATTATATAATAATATTTDesign primers
3261101TTTAATATCATTTATTATAAAATAATATCADesign primers
3265829ATGATTTTTTTTGATTTTATTTTATTTTTTDesign primers
3387626CGGATTCTTACGGATTCCCACGGATTTTAADesign primers
3415917CCACCACTTTATACCACTTTACACCACTGTDesign primers
3446220CGGATTTCCACGGATTTGCGCGGATTTTTADesign primers
3448926GCGGATTTCCACGGATTCCCGCGGATTTTADesign primers
3572143GCTGACGGACTGACGGGCTGAAGGDesign primers
3676107GGTTTTCAGTTTTCGGTTTTCGGTTTTTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.